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The map label for this gene is deoC [H]

Identifier: 218710426

GI number: 218710426

Start: 2633962

End: 2634738

Strand: Reverse

Name: deoC [H]

Synonym: VS_2463

Alternate gene names: 218710426

Gene position: 2634738-2633962 (Counterclockwise)

Preceding gene: 218710427

Following gene: 218710425

Centisome position: 79.86

GC content: 46.07

Gene sequence:

>777_bases
ATGAGCGATTTAAAAGCAGCAGCTCTACGTGCACTTAAACTTATGGACCTAACTACGCTAAATGACGACGATACTACTGA
AAAAGTAGTGGCACTTTGTCATGACGCGAAGACTGCAGTTGGCAACACCGCTGCAATCTGTATTTACCCTCGCTTTATCC
CAGCCGCTAAGAAAGCGTTGCGTGAGCAAGGTACTCCAGAAGTACGCATTGCGACTGTAACTAACTTCCCTCATGGTAAT
GACGACATCGAAATTGCTGTTGCAGAAACAAAAGCAGCGGTAGCGTACGGCGCAGACGAAGTTGACGTAGTATTCCCATA
CCGTGCTCTTATTGCTGACAACGAAGAAGTTGGCTTTGAGCTAGTTAAGCAATGTAAAGCCGCTTGTGGTGACATCACGC
TTAAAGTGATCATCGAAACTGGTGAGCTAAAAGAAGAAGCACTGATTAAGAAAGCTTCTCAAATCTGTATCGAAGCAGGT
GCAGACTTCATCAAAACTTCAACAGGTAAAGTGCCAGTAAACGCGACTCCAGAGTACGCGCGCATGATGCTTGAAGTTAT
TCGTGACATGGGCGTAGCTAAAACAGTGGGTTTCAAACCAGCTGGTGGCGTACGTACAGCTGAAGATGCTCAAGCTTACC
TAGCGATGGCTGATGAGCTACTAGGCGCTGAGTGGGCAGACAACATGCACTACCGTTTTGGTGCTTCAAGCCTACTAACT
AACCTTCTTAATACATTAGAAGTGACAGACGAAACTGCAGATCCAGCAGCATACTAA

Upstream 100 bases:

>100_bases
GTCCGTTCATTTGTGACTACTGAGCATTACTAAAATATCCATCTATACTGGATGGATGGTGAAGTAGTTAACTATTTGAA
TATATTGATCGGAGATAGAA

Downstream 100 bases:

>100_bases
TTTCCCTATCGGGTATAACAATAAAGTCTGTTTGATGGAGTGGTGTTAAGTCACTCCATATTACCTCTTTCCCTACAAAC
CATACTCACTAGAGTTTGGG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSDLKAAALRALKLMDLTTLNDDDTTEKVVALCHDAKTAVGNTAAICIYPRFIPAAKKALREQGTPEVRIATVTNFPHGN
DDIEIAVAETKAAVAYGADEVDVVFPYRALIADNEEVGFELVKQCKAACGDITLKVIIETGELKEEALIKKASQICIEAG
ADFIKTSTGKVPVNATPEYARMMLEVIRDMGVAKTVGFKPAGGVRTAEDAQAYLAMADELLGAEWADNMHYRFGASSLLT
NLLNTLEVTDETADPAAY

Sequences:

>Translated_258_residues
MSDLKAAALRALKLMDLTTLNDDDTTEKVVALCHDAKTAVGNTAAICIYPRFIPAAKKALREQGTPEVRIATVTNFPHGN
DDIEIAVAETKAAVAYGADEVDVVFPYRALIADNEEVGFELVKQCKAACGDITLKVIIETGELKEEALIKKASQICIEAG
ADFIKTSTGKVPVNATPEYARMMLEVIRDMGVAKTVGFKPAGGVRTAEDAQAYLAMADELLGAEWADNMHYRFGASSLLT
NLLNTLEVTDETADPAAY
>Mature_257_residues
SDLKAAALRALKLMDLTTLNDDDTTEKVVALCHDAKTAVGNTAAICIYPRFIPAAKKALREQGTPEVRIATVTNFPHGND
DIEIAVAETKAAVAYGADEVDVVFPYRALIADNEEVGFELVKQCKAACGDITLKVIIETGELKEEALIKKASQICIEAGA
DFIKTSTGKVPVNATPEYARMMLEVIRDMGVAKTVGFKPAGGVRTAEDAQAYLAMADELLGAEWADNMHYRFGASSLLTN
LLNTLEVTDETADPAAY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=254, Percent_Identity=39.3700787401575, Blast_Score=168, Evalue=6e-42,
Organism=Escherichia coli, GI1790841, Length=236, Percent_Identity=79.6610169491525, Blast_Score=387, Evalue=1e-109,
Organism=Caenorhabditis elegans, GI17533015, Length=244, Percent_Identity=39.7540983606557, Blast_Score=162, Evalue=1e-40,
Organism=Drosophila melanogaster, GI19922098, Length=259, Percent_Identity=38.996138996139, Blast_Score=142, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 27688; Mature: 27557

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLKAAALRALKLMDLTTLNDDDTTEKVVALCHDAKTAVGNTAAICIYPRFIPAAKKAL
CCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
REQGTPEVRIATVTNFPHGNDDIEIAVAETKAAVAYGADEVDVVFPYRALIADNEEVGFE
HHCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEECCCCEEEEECHHHHHCCCHHHHHH
LVKQCKAACGDITLKVIIETGELKEEALIKKASQICIEAGADFIKTSTGKVPVNATPEYA
HHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHH
RMMLEVIRDMGVAKTVGFKPAGGVRTAEDAQAYLAMADELLGAEWADNMHYRFGASSLLT
HHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCEEEECHHHHHH
NLLNTLEVTDETADPAAY
HHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SDLKAAALRALKLMDLTTLNDDDTTEKVVALCHDAKTAVGNTAAICIYPRFIPAAKKAL
CCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
REQGTPEVRIATVTNFPHGNDDIEIAVAETKAAVAYGADEVDVVFPYRALIADNEEVGFE
HHCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEECCCCEEEEECHHHHHCCCHHHHHH
LVKQCKAACGDITLKVIIETGELKEEALIKKASQICIEAGADFIKTSTGKVPVNATPEYA
HHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHH
RMMLEVIRDMGVAKTVGFKPAGGVRTAEDAQAYLAMADELLGAEWADNMHYRFGASSLLT
HHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCEEEECHHHHHH
NLLNTLEVTDETADPAAY
HHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA