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The map label for this gene is xseB

Identifier: 218710367

GI number: 218710367

Start: 2574259

End: 2574501

Strand: Direct

Name: xseB

Synonym: VS_2404

Alternate gene names: 218710367

Gene position: 2574259-2574501 (Clockwise)

Preceding gene: 218710358

Following gene: 218710368

Centisome position: 78.02

GC content: 42.8

Gene sequence:

>243_bases
ATGGCTACTAAGAAACCTGAAAATATGAGCTTTGAAGCGGCTATCGAAGAGCTTGATGGCTTGGTTGATCAACTAGAAAA
TGGTGATCTAGCTTTAGATGATGCGCTGAAAAAGTTCGAACGAGGCATCTCCCTCGCTCGTGCTGGTCAAAGTAAACTAA
ACGACGCTGAACAGCGTGTTAGCATCCTGCTGAAAAATGATGAAAATGCAGAACTGAGTGACTTTAACCCACAACCTGAA
TAA

Upstream 100 bases:

>100_bases
CGCCTTAAAAACGAACTTTCTAGCAAAAATTCTTGGTTACATTTGACCATCTCAGCGGCCTAGGGTAACGTTCGTTCATC
TTTCCAAACGCAGATTTATT

Downstream 100 bases:

>100_bases
CAAATTGTATGAGATCCCCTATGATCGAGACGTTATTGTCTTATCAAGCACGTAATAACGAGCAACTTAACCTTTGGCTT
GATCGCCTGCCACACCAAAA

Product: putative exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MATKKPENMSFEAAIEELDGLVDQLENGDLALDDALKKFERGISLARAGQSKLNDAEQRVSILLKNDENAELSDFNPQPE

Sequences:

>Translated_80_residues
MATKKPENMSFEAAIEELDGLVDQLENGDLALDDALKKFERGISLARAGQSKLNDAEQRVSILLKNDENAELSDFNPQPE
>Mature_79_residues
ATKKPENMSFEAAIEELDGLVDQLENGDLALDDALKKFERGISLARAGQSKLNDAEQRVSILLKNDENAELSDFNPQPE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

Organism=Escherichia coli, GI1786624, Length=77, Percent_Identity=53.2467532467532, Blast_Score=82, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_VIBSL (B7VJ99)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002417988.1
- GeneID:   7161941
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_2404
- HOGENOM:   HBG728416
- OMA:   APLNDYK
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8847; Mature: 8716

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKKPENMSFEAAIEELDGLVDQLENGDLALDDALKKFERGISLARAGQSKLNDAEQRV
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHCHHHHHHH
SILLKNDENAELSDFNPQPE
HHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATKKPENMSFEAAIEELDGLVDQLENGDLALDDALKKFERGISLARAGQSKLNDAEQRV
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHCHHHHHHH
SILLKNDENAELSDFNPQPE
HHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA