Click here to switch to the map view.

The map label for this gene is perM [H]

Identifier: 218710275

GI number: 218710275

Start: 2476691

End: 2477767

Strand: Reverse

Name: perM [H]

Synonym: VS_2308

Alternate gene names: 218710275

Gene position: 2477767-2476691 (Counterclockwise)

Preceding gene: 218710276

Following gene: 218710272

Centisome position: 75.1

GC content: 46.8

Gene sequence:

>1077_bases
ATGCTTGAAATGGTCAATCGTTGGTATAAACGACGTTTCTCTGATCCCCATGCTGTCAGCTTGGTTGCCATCATTCTCTT
CGGCTTTATAACGATCTACTTCTTTGGTCACCTCATTGCCCCACTTTTGGTGGCTATTGTTTTGGCTTATCTGCTTGAGT
GGCCGGTTACTCAACTTCAAAGACTCGGTGTTCCAAGAACCCCATCAGTGATGTTGGTGATTTTAATGTTCTTTAGCGTG
ATGTTACTTGCGCTGTTTGGTCTAGTACCAACGATTTGGGAACAGGTAGGTAACCTTATCAATGATATTCCAAGCATGTA
TGGTGGTTTACAGAAGTTCATCGCAACCATTCCTGAGCGTTACCCTGAACTGGCAAACCTGCAGATCGTTGAATCGATTG
TGTCTAATGCGAAAAACAAAGCATTAGGCTTTGGCGAAAGCGTTGTGAAGGGCTCTTTAGCTTCTCTTGTTAGTTTGGCG
ACGCTTGCGGTTTACCTGATTCTTGTACCGCTGCTGATTTTCTTCCTTTTGAAAGACAAAGAAGAGATGATCAGTATGGC
TAGTGGTGTTCTGCCTAAGAACCGTCGTCTAGCGACCAAGGTTTGGGTAGAGATGAACCAACAAATCTCAAATTACATTC
GCGGTAAGGTGCTTGAGATTTTGATCGTCGGTGGTGTCAGCTACGTAACCTTTGCGATTCTGGATTTACGTTATTCAGCA
CTGCTGGCTGTCGCGGTCGGCTTCTCGGTATTGATTCCTTACATCGGTGCGGCGGCTGTGACCGTTCCAGTCGCGATTGT
TGGCCTGTTCCAGTGGGGCTTAGAACCTCAGTTTTATTGGTTGCTTCTCGCTTACGGTATTATCCAAGCGTTAGATGGTA
ACGTGCTCGTTCCTGTTCTGTTCTCTGAAGCAGTGAACCTACACCCAGTAGCGATTATTGTAGCGGTGTTGGTGTTTGGC
GGACTGTGGGGGTTCTGGGGAGTGTTCTTTGCGATCCCTTTAGCCACGCTAGTGAAAGCGGTTTGGAATGCCTTACCGAG
CCATGCTCTCGATGATGATCCCGAACACCAATCGTAA

Upstream 100 bases:

>100_bases
GATATTGTTACTTTTTTGTCTAAGCAAGCCTATGACGTCATCGTAGAGGTTTGCTCTAATTACCATCATCTCCTCGTCAC
TAAAAAGGAATTGCAGTCAA

Downstream 100 bases:

>100_bases
TTGAACATCAATACAGTTGAGTAAGTATTAAAAAGGCCGAATATCCATGATATTCGGCCTTTTTGCATTTGGCTTAGTAG
TGAGTAGTGTATTTAGATTC

Product: putative permease perM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MLEMVNRWYKRRFSDPHAVSLVAIILFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQLQRLGVPRTPSVMLVILMFFSV
MLLALFGLVPTIWEQVGNLINDIPSMYGGLQKFIATIPERYPELANLQIVESIVSNAKNKALGFGESVVKGSLASLVSLA
TLAVYLILVPLLIFFLLKDKEEMISMASGVLPKNRRLATKVWVEMNQQISNYIRGKVLEILIVGGVSYVTFAILDLRYSA
LLAVAVGFSVLIPYIGAAAVTVPVAIVGLFQWGLEPQFYWLLLAYGIIQALDGNVLVPVLFSEAVNLHPVAIIVAVLVFG
GLWGFWGVFFAIPLATLVKAVWNALPSHALDDDPEHQS

Sequences:

>Translated_358_residues
MLEMVNRWYKRRFSDPHAVSLVAIILFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQLQRLGVPRTPSVMLVILMFFSV
MLLALFGLVPTIWEQVGNLINDIPSMYGGLQKFIATIPERYPELANLQIVESIVSNAKNKALGFGESVVKGSLASLVSLA
TLAVYLILVPLLIFFLLKDKEEMISMASGVLPKNRRLATKVWVEMNQQISNYIRGKVLEILIVGGVSYVTFAILDLRYSA
LLAVAVGFSVLIPYIGAAAVTVPVAIVGLFQWGLEPQFYWLLLAYGIIQALDGNVLVPVLFSEAVNLHPVAIIVAVLVFG
GLWGFWGVFFAIPLATLVKAVWNALPSHALDDDPEHQS
>Mature_358_residues
MLEMVNRWYKRRFSDPHAVSLVAIILFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQLQRLGVPRTPSVMLVILMFFSV
MLLALFGLVPTIWEQVGNLINDIPSMYGGLQKFIATIPERYPELANLQIVESIVSNAKNKALGFGESVVKGSLASLVSLA
TLAVYLILVPLLIFFLLKDKEEMISMASGVLPKNRRLATKVWVEMNQQISNYIRGKVLEILIVGGVSYVTFAILDLRYSA
LLAVAVGFSVLIPYIGAAAVTVPVAIVGLFQWGLEPQFYWLLLAYGIIQALDGNVLVPVLFSEAVNLHPVAIIVAVLVFG
GLWGFWGVFFAIPLATLVKAVWNALPSHALDDDPEHQS

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=353, Percent_Identity=57.2237960339943, Blast_Score=397, Evalue=1e-112,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 39495; Mature: 39495

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEMVNRWYKRRFSDPHAVSLVAIILFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQLQ
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RLGVPRTPSVMLVILMFFSVMLLALFGLVPTIWEQVGNLINDIPSMYGGLQKFIATIPER
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YPELANLQIVESIVSNAKNKALGFGESVVKGSLASLVSLATLAVYLILVPLLIFFLLKDK
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
EEMISMASGVLPKNRRLATKVWVEMNQQISNYIRGKVLEILIVGGVSYVTFAILDLRYSA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAVAVGFSVLIPYIGAAAVTVPVAIVGLFQWGLEPQFYWLLLAYGIIQALDGNVLVPVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEHHHH
FSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHALDDDPEHQS
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MLEMVNRWYKRRFSDPHAVSLVAIILFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQLQ
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RLGVPRTPSVMLVILMFFSVMLLALFGLVPTIWEQVGNLINDIPSMYGGLQKFIATIPER
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YPELANLQIVESIVSNAKNKALGFGESVVKGSLASLVSLATLAVYLILVPLLIFFLLKDK
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
EEMISMASGVLPKNRRLATKVWVEMNQQISNYIRGKVLEILIVGGVSYVTFAILDLRYSA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAVAVGFSVLIPYIGAAAVTVPVAIVGLFQWGLEPQFYWLLLAYGIIQALDGNVLVPVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEHHHH
FSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHALDDDPEHQS
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]