Click here to switch to the map view.

The map label for this gene is flaB [H]

Identifier: 218710260

GI number: 218710260

Start: 2464934

End: 2466157

Strand: Reverse

Name: flaB [H]

Synonym: VS_2293

Alternate gene names: 218710260

Gene position: 2466157-2464934 (Counterclockwise)

Preceding gene: 218710261

Following gene: 218710254

Centisome position: 74.75

GC content: 43.22

Gene sequence:

>1224_bases
TTGGTTTTCCGAGACGTCGGAAGCCGCTATACCGGAAAATCAATTGGAGAAATCACCATGGCAGTGAATGTAAATACCAA
CGTATCAGCAATGACAGCACAACGTTACCTAAACAGTGCAAACAGCGCTCAACAAACATCAATGGAACGTCTATCTTCAG
GTTCTAAAATCAACAGCGCAAAAGATGACGCTGCTGGCCTACAAATCTCGAACCGTTTGAACGTTCAGAGCCGCGGTCTT
GATGTTGCTGTACGTAACGCGAACGATGGTATCTCTATCGCTCAAACAGCAGAAGGTGCGATGAATGAAACATCAAACAT
TCTACAACGTATGCGTGATTTGTCTTTGCAATCAACAAACGGTTCAAATACTAAATCTGACCGTGTAGCAATCCAAGAAG
AAGTAACGGCGCTTAATGATGAATTAAATCGTATCGCTGAAACAACCTCTTTTGGTGGCAACAAGCTGCTTAACGGTACT
CACGGTACTAAGTCATTCCAAATTGGTGCAGACAATGGTGAGGCAGTAATGCTTCAACTGAAAGACATGCGTTCTGATAA
CGACCAAATGGGCGGCAGCAGCTACCAATTTACAGAAGCTAAAGGTAAAGATTGGGGCGTGAAAGCTGGTGCGAATGACT
TAACCATGTCATTAAAAGACAGCTTCGGTGACCAACGAGAAATCAACATCTCTGCTAAAGCTGGCGATGACATTGAAGAG
CTAGCGACTTACATTAACGGTCAACAAGACCTAGTAAAAGCATCAATTGATGAAGAAGGTAAACTGCAAATCTTCGCTGG
CAACAATAAAGTTGATGGAGAAATTGCATTTTCTGGTGCTTTATCAGATGAATTAGGCATGCAAGCAGGTGCGAAACCTG
AGGACCCAAAAACTCTAGAGGGTAAGCAAGTAACGGTTGATACTATCGACGTAACGTCTGTTGGTGGCGCTCAAGAATCT
GTTGCTGTTATCGATGCGGCACTTAAATATGTAGATAGCCACCGTTCTGAGCTTGGTGCATTCCAAAACCGTTTTGACCA
CGCAATTAACAACTTAGATAACATCAACGAGAACGTTAATGCATCTAAGAGCCGTATCAAAGATACCGATTTCGCGAAAG
AAACGACTAACATGACTAAGTCTCAAATTCTTTCACAAGCTTCAAGCTCGATTCTTGCACAAGCGAAGCAAGCTCCGAAC
TCGGCACTTAGCCTACTAGGTTAA

Upstream 100 bases:

>100_bases
CGCTTTCTTATCCTTTCTCGCTATTTCTTTAATTTTGTTGCTTTTTTTCTAAAGGTTTCAGCATTCACGCCGTTATTAAA
AGTAACTTAGAGATAACTAC

Downstream 100 bases:

>100_bases
TCGGTTGAAAAGCCACGTTGACTTTAAGCGTTGTTGATCACAAGCGTCAACGTTAGGCTTCCACAAATTAGCTCGTGGTG
AGAGATGAGCGCTAAACAGA

Product: flagellin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MVFRDVGSRYTGKSIGEITMAVNVNTNVSAMTAQRYLNSANSAQQTSMERLSSGSKINSAKDDAAGLQISNRLNVQSRGL
DVAVRNANDGISIAQTAEGAMNETSNILQRMRDLSLQSTNGSNTKSDRVAIQEEVTALNDELNRIAETTSFGGNKLLNGT
HGTKSFQIGADNGEAVMLQLKDMRSDNDQMGGSSYQFTEAKGKDWGVKAGANDLTMSLKDSFGDQREINISAKAGDDIEE
LATYINGQQDLVKASIDEEGKLQIFAGNNKVDGEIAFSGALSDELGMQAGAKPEDPKTLEGKQVTVDTIDVTSVGGAQES
VAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQAPN
SALSLLG

Sequences:

>Translated_407_residues
MVFRDVGSRYTGKSIGEITMAVNVNTNVSAMTAQRYLNSANSAQQTSMERLSSGSKINSAKDDAAGLQISNRLNVQSRGL
DVAVRNANDGISIAQTAEGAMNETSNILQRMRDLSLQSTNGSNTKSDRVAIQEEVTALNDELNRIAETTSFGGNKLLNGT
HGTKSFQIGADNGEAVMLQLKDMRSDNDQMGGSSYQFTEAKGKDWGVKAGANDLTMSLKDSFGDQREINISAKAGDDIEE
LATYINGQQDLVKASIDEEGKLQIFAGNNKVDGEIAFSGALSDELGMQAGAKPEDPKTLEGKQVTVDTIDVTSVGGAQES
VAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQAPN
SALSLLG
>Mature_407_residues
MVFRDVGSRYTGKSIGEITMAVNVNTNVSAMTAQRYLNSANSAQQTSMERLSSGSKINSAKDDAAGLQISNRLNVQSRGL
DVAVRNANDGISIAQTAEGAMNETSNILQRMRDLSLQSTNGSNTKSDRVAIQEEVTALNDELNRIAETTSFGGNKLLNGT
HGTKSFQIGADNGEAVMLQLKDMRSDNDQMGGSSYQFTEAKGKDWGVKAGANDLTMSLKDSFGDQREINISAKAGDDIEE
LATYINGQQDLVKASIDEEGKLQIFAGNNKVDGEIAFSGALSDELGMQAGAKPEDPKTLEGKQVTVDTIDVTSVGGAQES
VAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQAPN
SALSLLG

Specific function: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. FlaB/D is not essential for polar flagellar synthesis and swimming motility. Homopolymer of flaB/D is not able to form a functional filament [H]

COG id: COG1344

COG function: function code N; Flagellin and related hook-associated proteins

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial flagellin family [H]

Homologues:

Organism=Escherichia coli, GI1788232, Length=164, Percent_Identity=45.7317073170732, Blast_Score=138, Evalue=5e-34,

Paralogues:

None

Copy number: 200,000-400,000 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001492
- InterPro:   IPR001029
- InterPro:   IPR010810 [H]

Pfam domain/function: PF00700 Flagellin_C; PF07196 Flagellin_IN; PF00669 Flagellin_N [H]

EC number: NA

Molecular weight: Translated: 43437; Mature: 43437

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFRDVGSRYTGKSIGEITMAVNVNTNVSAMTAQRYLNSANSAQQTSMERLSSGSKINSA
CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC
KDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNETSNILQRMRDLSLQSTN
CCCCCCEEECCCCCEECCCCEEEEECCCCCCEEHHHHCHHHHHHHHHHHHHHHCCEECCC
GSNTKSDRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGTKSFQIGADNGEAVMLQL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEECCCCCEEEEEE
KDMRSDNDQMGGSSYQFTEAKGKDWGVKAGANDLTMSLKDSFGDQREINISAKAGDDIEE
ECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEHHCCCCCEEEEEECCCCCCHHH
LATYINGQQDLVKASIDEEGKLQIFAGNNKVDGEIAFSGALSDELGMQAGAKPEDPKTLE
HHHHHCCHHHHHHHCCCCCCCEEEEECCCCCCCEEEECCCCCHHHCCCCCCCCCCCCCCC
GKQVTVDTIDVTSVGGAQESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVN
CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQAPNSALSLLG
CHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
>Mature Secondary Structure
MVFRDVGSRYTGKSIGEITMAVNVNTNVSAMTAQRYLNSANSAQQTSMERLSSGSKINSA
CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC
KDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNETSNILQRMRDLSLQSTN
CCCCCCEEECCCCCEECCCCEEEEECCCCCCEEHHHHCHHHHHHHHHHHHHHHCCEECCC
GSNTKSDRVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGTKSFQIGADNGEAVMLQL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEECCCCCEEEEEE
KDMRSDNDQMGGSSYQFTEAKGKDWGVKAGANDLTMSLKDSFGDQREINISAKAGDDIEE
ECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEHHCCCCCEEEEEECCCCCCHHH
LATYINGQQDLVKASIDEEGKLQIFAGNNKVDGEIAFSGALSDELGMQAGAKPEDPKTLE
HHHHHCCHHHHHHHCCCCCCCEEEEECCCCCCCEEEECCCCCHHHCCCCCCCCCCCCCCC
GKQVTVDTIDVTSVGGAQESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVN
CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQAPNSALSLLG
CHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7883718; 12620739 [H]