| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is 218710241
Identifier: 218710241
GI number: 218710241
Start: 2445063
End: 2445470
Strand: Reverse
Name: 218710241
Synonym: VS_2274
Alternate gene names: NA
Gene position: 2445470-2445063 (Counterclockwise)
Preceding gene: 218710242
Following gene: 218710240
Centisome position: 74.12
GC content: 43.38
Gene sequence:
>408_bases ATGAGTGCCAGTGAAAAAATCCGAGTAAGCGATGTAATGGCTAATACGTATGTGATTATCGATGGACTAACCACTGTGTT GGAAGCGATAGAGATGGCTAAGAAGCACAAAGTGAAAGCTATCATTGTTGATAAGCGCCACGAAGATGACGAATACGGCA TCGTATTGATGAATGATATTGCCAAGAAAGTACTGGCTAAGAACCGATCTCCAAAGCGAACCAATGTTTATGAGATCATG ACCAAGCCAGCGCTAAGCGTGTCTGCCGATATGAATGTGAAGTATTGTGCTCGCCTGTTTGAACGCTTTGGTATCAGTCG TGCCCCTGTGGTCAGTGACCATAAAATAGTTGGTATGGTTAGTTACAATAATATCGTGATCAACGGTATGGCGAGAGATG ACGTGTAG
Upstream 100 bases:
>100_bases AAGAGTCAGGGCAAGGGATAGCAGTGCAGATTGATGTCGAAGATGCAGTCGGGGTCGCGCACCAAGTTGAAACATTAACT AAGGTTGTGGAGGACGAGTT
Downstream 100 bases:
>100_bases CATTTAGATACGTACAATAGGCTCATAAATTTTATGGAGAAGTACGTGTGAAATTATTTTTTGCTTCAGACCTACACGGT TCGCTACCAGCAACAGAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: CBS Domain-Containing Protein; Signal-Transduction Protein With CBS Domains; Signal Transduction Protein With CBS Domains; CBS Domain Containing Protein; CBS Domain Protein; CBS Domain Pair Protein; CP12 Polypeptide; Signal Transduction Protein; CP12 Domain Protein
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MSASEKIRVSDVMANTYVIIDGLTTVLEAIEMAKKHKVKAIIVDKRHEDDEYGIVLMNDIAKKVLAKNRSPKRTNVYEIM TKPALSVSADMNVKYCARLFERFGISRAPVVSDHKIVGMVSYNNIVINGMARDDV
Sequences:
>Translated_135_residues MSASEKIRVSDVMANTYVIIDGLTTVLEAIEMAKKHKVKAIIVDKRHEDDEYGIVLMNDIAKKVLAKNRSPKRTNVYEIM TKPALSVSADMNVKYCARLFERFGISRAPVVSDHKIVGMVSYNNIVINGMARDDV >Mature_134_residues SASEKIRVSDVMANTYVIIDGLTTVLEAIEMAKKHKVKAIIVDKRHEDDEYGIVLMNDIAKKVLAKNRSPKRTNVYEIMT KPALSVSADMNVKYCARLFERFGISRAPVVSDHKIVGMVSYNNIVINGMARDDV
Specific function: Unknown
COG id: COG0517
COG function: function code R; FOG: CBS domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15130; Mature: 14999
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.9 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASEKIRVSDVMANTYVIIDGLTTVLEAIEMAKKHKVKAIIVDKRHEDDEYGIVLMNDI CCCCCCEEHEEEHCCEEEEECCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCEEEHHHH AKKVLAKNRSPKRTNVYEIMTKPALSVSADMNVKYCARLFERFGISRAPVVSDHKIVGMV HHHHHHCCCCCCCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCEECCCEEEEEE SYNNIVINGMARDDV EECCEEEECCCCCCC >Mature Secondary Structure SASEKIRVSDVMANTYVIIDGLTTVLEAIEMAKKHKVKAIIVDKRHEDDEYGIVLMNDI CCCCCEEHEEEHCCEEEEECCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCEEEHHHH AKKVLAKNRSPKRTNVYEIMTKPALSVSADMNVKYCARLFERFGISRAPVVSDHKIVGMV HHHHHHCCCCCCCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCEECCCEEEEEE SYNNIVINGMARDDV EECCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA