| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is 218710189
Identifier: 218710189
GI number: 218710189
Start: 2387156
End: 2388007
Strand: Reverse
Name: 218710189
Synonym: VS_2221
Alternate gene names: NA
Gene position: 2388007-2387156 (Counterclockwise)
Preceding gene: 218710190
Following gene: 218710188
Centisome position: 72.38
GC content: 44.95
Gene sequence:
>852_bases ATGATTGAACAGTCATATTCCCTTGCGAGCGGGACACTTGCAACACAACAGATTGGCAACCCACAAACGACCGTAACGAC GGTCGTTTTTATTCATGGCTGGCTAGACAATTCCGCAAGTTTTACTCAGGTCATGCAGCAAGTCTCTAAGCTTTCTTCAG ATACTCACTTAGTTGCGATCGATCTTTTTGGGCACGGTTACTCGTCGCATAAGTCGGGGAGTTACTACCCATTTCACGAC TATATTGATGATTTACACCAGCTAGTGACCAAATTATCGCCAAACGGACTGGTACTGGTAGGACATTCACTTGGTGCATT GATAGCAAGTTGCTATAGTGCCGCCTTTCCTGAAAAGGTGTCAGGATTAATTCAAATTGAAGGTCACGGACCTCTTTCTG AAGCTCCCCACGAAACAGTCTCTCGCTTGAGGGATGGGGTACTTAGTCGTCTTCGACAGCGAAGAAAGCCTTCACGTCCT CTGGCAAGCCTTGAGGATGCTATTAAGCTGAGAGCTTACGCCAACCAAATTAATGCTGAATTAATCGCTCCTATTGTTGA GCGAGGTATTGTCGAGTTTGAGAACTCTTGGCAATGGCGATGCGACCCTAATCTAAAATGTGACTCGTTATATCGAATGT CACAGGCGCACGCTGAAGCGATCATGGCGGCTATTGAATGCCCTCAATTAATAATCCTAGGGAATGATGGATACCGACAT TTGCAGCATAATCGCTACAAATCAGCGCATAGTCCTCTAAATATAGAGACGATTCCTGGCGGACATCATTGTCATTTAGA GAGCCCAGAGCTAGTTTCAGAGCTAATTCTTGGTGTAGTTAACAAAATTTAA
Upstream 100 bases:
>100_bases GCAGTTTTCAAACCATGCCTAAGTCAGGGCGTGTGATTCAAGATGTGCAATAGTCGAACCTTAACTCGACATACCCAATG ACAGGGACACCATACTATCA
Downstream 100 bases:
>100_bases ACAAGTGTTTGAGCCTTTTAGTGCTCATGCACTAAAGCTGTGCTGTAATACCGCAATGATAAAAAGCGGCGAAGCAGTCG TCAGCTGATAAACGAGGAGT
Product: putative hydrolase
Products: NA
Alternate protein names: Hydrolase; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase; Hydrolase Alpha/Beta Fold Family; Alpha/Beta Hydrolase Fold Protein; Hydrolase/Acyltransferase; Lipase A; Lipase; Hydrolase Protein; Alpha/Beta Fold Superfamily Hydrolase; Alpha/Beta Hydrolase Family Protein; Lipase LipA; Hydrolase Alpha/Beta Fold Family Protein; Epoxide Hydrolase; Alpha/Beta Superfamily Hydrolase; Alpha/Beta Fold Hydrolase Family Protein
Number of amino acids: Translated: 283; Mature: 283
Protein sequence:
>283_residues MIEQSYSLASGTLATQQIGNPQTTVTTVVFIHGWLDNSASFTQVMQQVSKLSSDTHLVAIDLFGHGYSSHKSGSYYPFHD YIDDLHQLVTKLSPNGLVLVGHSLGALIASCYSAAFPEKVSGLIQIEGHGPLSEAPHETVSRLRDGVLSRLRQRRKPSRP LASLEDAIKLRAYANQINAELIAPIVERGIVEFENSWQWRCDPNLKCDSLYRMSQAHAEAIMAAIECPQLIILGNDGYRH LQHNRYKSAHSPLNIETIPGGHHCHLESPELVSELILGVVNKI
Sequences:
>Translated_283_residues MIEQSYSLASGTLATQQIGNPQTTVTTVVFIHGWLDNSASFTQVMQQVSKLSSDTHLVAIDLFGHGYSSHKSGSYYPFHD YIDDLHQLVTKLSPNGLVLVGHSLGALIASCYSAAFPEKVSGLIQIEGHGPLSEAPHETVSRLRDGVLSRLRQRRKPSRP LASLEDAIKLRAYANQINAELIAPIVERGIVEFENSWQWRCDPNLKCDSLYRMSQAHAEAIMAAIECPQLIILGNDGYRH LQHNRYKSAHSPLNIETIPGGHHCHLESPELVSELILGVVNKI >Mature_283_residues MIEQSYSLASGTLATQQIGNPQTTVTTVVFIHGWLDNSASFTQVMQQVSKLSSDTHLVAIDLFGHGYSSHKSGSYYPFHD YIDDLHQLVTKLSPNGLVLVGHSLGALIASCYSAAFPEKVSGLIQIEGHGPLSEAPHETVSRLRDGVLSRLRQRRKPSRP LASLEDAIKLRAYANQINAELIAPIVERGIVEFENSWQWRCDPNLKCDSLYRMSQAHAEAIMAAIECPQLIILGNDGYRH LQHNRYKSAHSPLNIETIPGGHHCHLESPELVSELILGVVNKI
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI18777795, Length=291, Percent_Identity=24.0549828178694, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI17137390, Length=291, Percent_Identity=28.5223367697594, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI21357291, Length=287, Percent_Identity=27.1777003484321, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24667992, Length=287, Percent_Identity=27.1777003484321, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24655874, Length=293, Percent_Identity=24.9146757679181, Blast_Score=74, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31276; Mature: 31276
Theoretical pI: Translated: 6.83; Mature: 6.83
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEQSYSLASGTLATQQIGNPQTTVTTVVFIHGWLDNSASFTQVMQQVSKLSSDTHLVAI CCCCCCCHHCCCHHHHHCCCCCHHHEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEE DLFGHGYSSHKSGSYYPFHDYIDDLHQLVTKLSPNGLVLVGHSLGALIASCYSAAFPEKV EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCHHHC SGLIQIEGHGPLSEAPHETVSRLRDGVLSRLRQRRKPSRPLASLEDAIKLRAYANQINAE CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LIAPIVERGIVEFENSWQWRCDPNLKCDSLYRMSQAHAEAIMAAIECPQLIILGNDGYRH HHHHHHHHCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH LQHNRYKSAHSPLNIETIPGGHHCHLESPELVSELILGVVNKI HHHHHHHCCCCCCEEEECCCCCEECCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MIEQSYSLASGTLATQQIGNPQTTVTTVVFIHGWLDNSASFTQVMQQVSKLSSDTHLVAI CCCCCCCHHCCCHHHHHCCCCCHHHEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEE DLFGHGYSSHKSGSYYPFHDYIDDLHQLVTKLSPNGLVLVGHSLGALIASCYSAAFPEKV EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCHHHC SGLIQIEGHGPLSEAPHETVSRLRDGVLSRLRQRRKPSRPLASLEDAIKLRAYANQINAE CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LIAPIVERGIVEFENSWQWRCDPNLKCDSLYRMSQAHAEAIMAAIECPQLIILGNDGYRH HHHHHHHHCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH LQHNRYKSAHSPLNIETIPGGHHCHLESPELVSELILGVVNKI HHHHHHHCCCCCCEEEECCCCCEECCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA