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The map label for this gene is 218710168

Identifier: 218710168

GI number: 218710168

Start: 2347339

End: 2347944

Strand: Direct

Name: 218710168

Synonym: VS_2198

Alternate gene names: NA

Gene position: 2347339-2347944 (Clockwise)

Preceding gene: 218710166

Following gene: 218710176

Centisome position: 71.15

GC content: 43.73

Gene sequence:

>606_bases
CTGACATATACAAGCTTTCAAAGCCTTGCTGCATTGGGGGCAATAACGAGACATGGATTTAATGTGTACCCTGTTTTAAT
TTTCACTTCACTTTTATGCGTCTTATTCCAATTTGAGCCAATACAAGCTTGGGTCGTATGGGATAGCAATGCGATTGCCG
AGGGGCAATGGTGGCGGATCCTAACAGGAAACTTTTCACATACCAACTACTCGCACCTTCTGATGAATCTAGCAGGCTTA
TGGATCATCAGCTATCTGTTTCAACCAATTAAAAAACAGCTTGTTCTTGCTCTGCTTGTGATTAGTTTAGTGACTGGAAT
CGCTCTGTTGTTTTCGAGTATTCAGATCTATGTTGGCCTATCTGGCACTTTGCATGGGTTGTTTGGCTTATTCGCGCTCA
GTGAGGCTTTAAACGGTAGGAGATCAAGTTGGCTGTTACTATTGGGATTAATCGCTAAAATCGCTTGGGAGCAGCTTATT
GGCCCTTCTAGCACGACTGGTGAACTGATTAATGCTCGTGTCGCGATTGAAGCCCACCTAGCAGGTGCATTGGCCGGAGG
CTTCATATCTATCGCTTCATTTCTAACAAGTAGACAAACGGATTAA

Upstream 100 bases:

>100_bases
GAGATAACGAGAGGATACGCGCAGTTCCCATCGGGCGATGCTCTTCTGATGGGTGCTGAAGAATGATAAGCTCAACGTTC
GATTCTAGTGGCGTAACCCA

Downstream 100 bases:

>100_bases
AGTTGAATTCTTTCGCGGTTCTTTTTAACTGTCGCTTCACCTATCCCTTTCACACTCACCAAATCATCAGCAGTCGTAAA
TGCCCCGTTTTGATCCCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: Integral Membrane Protein; Rhomboid Protein; Rhomboid-Like Protein; Peptidase; Rhomboid Family Integral Membrane Protein; Rhomboid Family Membrane Protein

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MTYTSFQSLAALGAITRHGFNVYPVLIFTSLLCVLFQFEPIQAWVVWDSNAIAEGQWWRILTGNFSHTNYSHLLMNLAGL
WIISYLFQPIKKQLVLALLVISLVTGIALLFSSIQIYVGLSGTLHGLFGLFALSEALNGRRSSWLLLLGLIAKIAWEQLI
GPSSTTGELINARVAIEAHLAGALAGGFISIASFLTSRQTD

Sequences:

>Translated_201_residues
MTYTSFQSLAALGAITRHGFNVYPVLIFTSLLCVLFQFEPIQAWVVWDSNAIAEGQWWRILTGNFSHTNYSHLLMNLAGL
WIISYLFQPIKKQLVLALLVISLVTGIALLFSSIQIYVGLSGTLHGLFGLFALSEALNGRRSSWLLLLGLIAKIAWEQLI
GPSSTTGELINARVAIEAHLAGALAGGFISIASFLTSRQTD
>Mature_200_residues
TYTSFQSLAALGAITRHGFNVYPVLIFTSLLCVLFQFEPIQAWVVWDSNAIAEGQWWRILTGNFSHTNYSHLLMNLAGLW
IISYLFQPIKKQLVLALLVISLVTGIALLFSSIQIYVGLSGTLHGLFGLFALSEALNGRRSSWLLLLGLIAKIAWEQLIG
PSSTTGELINARVAIEAHLAGALAGGFISIASFLTSRQTD

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21983; Mature: 21852

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYTSFQSLAALGAITRHGFNVYPVLIFTSLLCVLFQFEPIQAWVVWDSNAIAEGQWWRI
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEE
LTGNFSHTNYSHLLMNLAGLWIISYLFQPIKKQLVLALLVISLVTGIALLFSSIQIYVGL
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
SGTLHGLFGLFALSEALNGRRSSWLLLLGLIAKIAWEQLIGPSSTTGELINARVAIEAHL
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
AGALAGGFISIASFLTSRQTD
HHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TYTSFQSLAALGAITRHGFNVYPVLIFTSLLCVLFQFEPIQAWVVWDSNAIAEGQWWRI
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEE
LTGNFSHTNYSHLLMNLAGLWIISYLFQPIKKQLVLALLVISLVTGIALLFSSIQIYVGL
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
SGTLHGLFGLFALSEALNGRRSSWLLLLGLIAKIAWEQLIGPSSTTGELINARVAIEAHL
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
AGALAGGFISIASFLTSRQTD
HHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA