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The map label for this gene is ydcF [C]

Identifier: 218709993

GI number: 218709993

Start: 2158996

End: 2159673

Strand: Direct

Name: ydcF [C]

Synonym: VS_2012

Alternate gene names: 218709993

Gene position: 2158996-2159673 (Clockwise)

Preceding gene: 218709992

Following gene: 218709996

Centisome position: 65.44

GC content: 46.46

Gene sequence:

>678_bases
ATGACTAAGCAATCCATAGCTAAGCAACCTGTAACAAAGAACTCAAAGGGTAAGCTATATCACTCGATCGACACCCTTTG
GAACTTCATGTCGATGGGTCATGACATCACGCCTTCAGATTGTATATTTGTGTTGTGCAGTAACGATACTCGCGTTGCTG
AATACGCTGCTGAGCTCTATCACCAAGGTGTGGCGCCTTATATCGTATTTTCTGGCGGTTTGGGACGCTTTACTGAAGGC
AGTTTTGAACGCTCAGAGGCTGAAACATTCGCGGCTATCGCACGAGACGCTGGCGTGCCTGACTCTGACATTATCATTGA
GAAGCACGCAACTAATACTGGGGAGAACGTACGATTCACCCACAAATTGTTGACTGAGCGTGGACTATCCCCGAAACGCC
TGACCCTAGTTCAGAAACCCTTTATGGAGAAACGCACTTACGCCACGTTTGCTAAACAGTGGCCTGACGAAGTTACCGAG
ATTCAAGTCACTTCACAATGGCAAGACTGGATTGATTACTTTAACGAAGAGTTACCATTAGACATGGTGTTAGGTGCATT
GATTGCTGATTATGAGCGAATCAAATCCTACCCCGCTCAGGGCTTTCAAATTGAGATGCCCATCCCTGACGACGTTGACC
ATGCCTATCAAGCATTAAAGAGGCTCGGTTTCGAATAA

Upstream 100 bases:

>100_bases
CTCCCTCCTATTGTCGATACCCCAGACAAGCTGATCTCTTCTAAAAAGATCCTCGGTTTAGGTTACTCGTTTAAATTCGA
TTCCACATTGGACGCTCTTT

Downstream 100 bases:

>100_bases
AGCAAAAGATCGACTAAGAATAAAATAGAAGCTCGGCTTGGAATAAAACAAAAGCTCGGCTCAATAAACAAAAACGGTGA
CACTAGGTCACCGTTTTCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MTKQSIAKQPVTKNSKGKLYHSIDTLWNFMSMGHDITPSDCIFVLCSNDTRVAEYAAELYHQGVAPYIVFSGGLGRFTEG
SFERSEAETFAAIARDAGVPDSDIIIEKHATNTGENVRFTHKLLTERGLSPKRLTLVQKPFMEKRTYATFAKQWPDEVTE
IQVTSQWQDWIDYFNEELPLDMVLGALIADYERIKSYPAQGFQIEMPIPDDVDHAYQALKRLGFE

Sequences:

>Translated_225_residues
MTKQSIAKQPVTKNSKGKLYHSIDTLWNFMSMGHDITPSDCIFVLCSNDTRVAEYAAELYHQGVAPYIVFSGGLGRFTEG
SFERSEAETFAAIARDAGVPDSDIIIEKHATNTGENVRFTHKLLTERGLSPKRLTLVQKPFMEKRTYATFAKQWPDEVTE
IQVTSQWQDWIDYFNEELPLDMVLGALIADYERIKSYPAQGFQIEMPIPDDVDHAYQALKRLGFE
>Mature_224_residues
TKQSIAKQPVTKNSKGKLYHSIDTLWNFMSMGHDITPSDCIFVLCSNDTRVAEYAAELYHQGVAPYIVFSGGLGRFTEGS
FERSEAETFAAIARDAGVPDSDIIIEKHATNTGENVRFTHKLLTERGLSPKRLTLVQKPFMEKRTYATFAKQWPDEVTEI
QVTSQWQDWIDYFNEELPLDMVLGALIADYERIKSYPAQGFQIEMPIPDDVDHAYQALKRLGFE

Specific function: The imp locus inhibits the extrachromosomal maintenance of the streptomyces plasmid SLP1. May function as a transcriptional activator [H]

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ydcF [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003848
- InterPro:   IPR014729 [H]

Pfam domain/function: PF02698 DUF218 [H]

EC number: NA

Molecular weight: Translated: 25594; Mature: 25463

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKQSIAKQPVTKNSKGKLYHSIDTLWNFMSMGHDITPSDCIFVLCSNDTRVAEYAAELY
CCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHH
HQGVAPYIVFSGGLGRFTEGSFERSEAETFAAIARDAGVPDSDIIIEKHATNTGENVRFT
HCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHH
HKLLTERGLSPKRLTLVQKPFMEKRTYATFAKQWPDEVTEIQVTSQWQDWIDYFNEELPL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEHHHHHHHHHHHCCCCCH
DMVLGALIADYERIKSYPAQGFQIEMPIPDDVDHAYQALKRLGFE
HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKQSIAKQPVTKNSKGKLYHSIDTLWNFMSMGHDITPSDCIFVLCSNDTRVAEYAAELY
CCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHH
HQGVAPYIVFSGGLGRFTEGSFERSEAETFAAIARDAGVPDSDIIIEKHATNTGENVRFT
HCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHH
HKLLTERGLSPKRLTLVQKPFMEKRTYATFAKQWPDEVTEIQVTSQWQDWIDYFNEELPL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEHHHHHHHHHHHCCCCCH
DMVLGALIADYERIKSYPAQGFQIEMPIPDDVDHAYQALKRLGFE
HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2770697; 12000953 [H]