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The map label for this gene is ycbL [H]

Identifier: 218709904

GI number: 218709904

Start: 2060712

End: 2061371

Strand: Reverse

Name: ycbL [H]

Synonym: VS_1917

Alternate gene names: 218709904

Gene position: 2061371-2060712 (Counterclockwise)

Preceding gene: 218709905

Following gene: 218709902

Centisome position: 62.48

GC content: 47.27

Gene sequence:

>660_bases
TTGTATATGTCTCTTAAGTATCAAGTTGTCCCTGTTACCTCGTTCTCTCAAAACTGCTCAATTGTGTGGTGTGATGAGAC
AATGGAAGGCATCGTTGTCGATCCGGGCGGTGATGTTCAGCAACTGGCTGCTATCATCGAAGAGTTAGGTGTTAAAGTGG
TGAATTTGGTATTGACTCACGGTCACCTAGACCATGTGGGCGGAACAGTACCGCTTGCTGAAATCTTGAACGTGAACATT
GTTGGCCCACATAAAGCCGATAACTTTTGGCTTCAAGGCCTAGAGAATCAAAGCCAGATGTTCGGCTTCCCACTGTGTAA
AGCCTTTGAACCAAACACTTGGTTAGAAGAGGGCGACAAAGTGACTTTTGGTAACCAAGTTATCGATGTGATTCACACGC
CGGGTCATACTCCGGGTCACGTCGTGCTATTCAGTGAGCAAGCGCGTATGGCGTTTGTTGGTGATGTTTTATTTAACGGT
GCTATTGGTCGCACGGATTTCCCGCAAGGCGACTTCAACACGCTAATTGCTTCAATCAAGACTAAACTTTGGCCGCTAGG
CAGTGACGTGAGATTTGTACCGGGCCATGGTCCAGAGTCTACATTTGGTCGTGAGCGCGCATCAAATCCATTCGTTGCCG
ACGAGATGCCTCTTTATTAA

Upstream 100 bases:

>100_bases
TTGGTAGCGTTAAGCTGAATTTACGAGCGAATGCTAGGTACTTGTCAAAGTAGACATCCAATGTCATAGTTTGCCCAAAT
TTCAGTTTGCCCTCTAAGGT

Downstream 100 bases:

>100_bases
TTAAATCTTTGATTTAATATAAGAACGATTGAAAATGAAGCTTAGCTTTTGTTATGGAAGCTAAGCTTTTTTATTGCGTG
CGGTTTTACTTTTAAACCAG

Product: glyoxylase II family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MYMSLKYQVVPVTSFSQNCSIVWCDETMEGIVVDPGGDVQQLAAIIEELGVKVVNLVLTHGHLDHVGGTVPLAEILNVNI
VGPHKADNFWLQGLENQSQMFGFPLCKAFEPNTWLEEGDKVTFGNQVIDVIHTPGHTPGHVVLFSEQARMAFVGDVLFNG
AIGRTDFPQGDFNTLIASIKTKLWPLGSDVRFVPGHGPESTFGRERASNPFVADEMPLY

Sequences:

>Translated_219_residues
MYMSLKYQVVPVTSFSQNCSIVWCDETMEGIVVDPGGDVQQLAAIIEELGVKVVNLVLTHGHLDHVGGTVPLAEILNVNI
VGPHKADNFWLQGLENQSQMFGFPLCKAFEPNTWLEEGDKVTFGNQVIDVIHTPGHTPGHVVLFSEQARMAFVGDVLFNG
AIGRTDFPQGDFNTLIASIKTKLWPLGSDVRFVPGHGPESTFGRERASNPFVADEMPLY
>Mature_219_residues
MYMSLKYQVVPVTSFSQNCSIVWCDETMEGIVVDPGGDVQQLAAIIEELGVKVVNLVLTHGHLDHVGGTVPLAEILNVNI
VGPHKADNFWLQGLENQSQMFGFPLCKAFEPNTWLEEGDKVTFGNQVIDVIHTPGHTPGHVVLFSEQARMAFVGDVLFNG
AIGRTDFPQGDFNTLIASIKTKLWPLGSDVRFVPGHGPESTFGRERASNPFVADEMPLY

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. Glyoxalase II family [H]

Homologues:

Organism=Homo sapiens, GI41327741, Length=191, Percent_Identity=31.413612565445, Blast_Score=86, Evalue=3e-17,
Organism=Escherichia coli, GI1787158, Length=215, Percent_Identity=52.5581395348837, Blast_Score=262, Evalue=1e-71,
Organism=Caenorhabditis elegans, GI17538952, Length=202, Percent_Identity=27.7227722772277, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI221330176, Length=194, Percent_Identity=27.8350515463918, Blast_Score=78, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 24022; Mature: 24022

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYMSLKYQVVPVTSFSQNCSIVWCDETMEGIVVDPGGDVQQLAAIIEELGVKVVNLVLTH
CEEEEEEEEEEECCCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHCHHHHHHHHHC
GHLDHVGGTVPLAEILNVNIVGPHKADNFWLQGLENQSQMFGFPLCKAFEPNTWLEEGDK
CCHHHCCCCCCHHHHHEEEEECCCCCCCHHHCCCCCCHHHCCCCCCCCCCCCCHHHCCCE
VTFGNQVIDVIHTPGHTPGHVVLFSEQARMAFVGDVLFNGAIGRTDFPQGDFNTLIASIK
EEECCEEEEEEECCCCCCCEEEEEECCCCEEEHHHHHHCCCCCCCCCCCCHHHHHHHHHH
TKLWPLGSDVRFVPGHGPESTFGRERASNPFVADEMPLY
HHHCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MYMSLKYQVVPVTSFSQNCSIVWCDETMEGIVVDPGGDVQQLAAIIEELGVKVVNLVLTH
CEEEEEEEEEEECCCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHCHHHHHHHHHC
GHLDHVGGTVPLAEILNVNIVGPHKADNFWLQGLENQSQMFGFPLCKAFEPNTWLEEGDK
CCHHHCCCCCCHHHHHEEEEECCCCCCCHHHCCCCCCHHHCCCCCCCCCCCCCHHHCCCE
VTFGNQVIDVIHTPGHTPGHVVLFSEQARMAFVGDVLFNGAIGRTDFPQGDFNTLIASIK
EEECCEEEEEEECCCCCCCEEEEEECCCCEEEHHHHHHCCCCCCCCCCCCHHHHHHHHHH
TKLWPLGSDVRFVPGHGPESTFGRERASNPFVADEMPLY
HHHCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]