| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is folM [H]
Identifier: 218709739
GI number: 218709739
Start: 1872581
End: 1873297
Strand: Direct
Name: folM [H]
Synonym: VS_1751
Alternate gene names: 218709739
Gene position: 1872581-1873297 (Clockwise)
Preceding gene: 218709738
Following gene: 218709743
Centisome position: 56.76
GC content: 46.44
Gene sequence:
>717_bases ATGAGTGAAACAATCCTGATAACCGGCGTGGGAAAGCGACTCGGATTCGCACTGGCGCAGCAACTTTTAGCGGATGGATA CAATGTGGTTGGCACTTACCGCAACGACTATCCTCAATTGCAACTGTTGCGCGACAGTGGAGCCGACTTGCAGCAAGTAG ACTTTTATCAACAAAGCAGCCTAGAGGGCTTTCTTGATTATGTTGGTCAAGAATATAAGACACTCAGAGCCGTCATACAC AACGCTTCGGACTGGAAACCTGAGAGCAAGAAAGATCCCAGTGACAATGCATCCCAAATCATGCACCAGATGATGACGAT TCACGCTACCGTGCCTTATCTGTTCAATTTAACACTCAAAGACCAACTGATGTCTGGCGATGAAACTTCAGACATCATCC ACATCAGTGATTACGTTGCGGAAAAAGGCAGTAAAAAACACATCGCTTACGCGGCCAGTAAAGCTGCGCTCAACAACCTA ACGCTGTCGTTTTCAGCGATGCTGGCTCCCAAGGTCAAAGTAAATACCCTCTCTCCAGCCATGATTAAGTTTAATGAACA TGACGATGAGGCATACAAAACCAAAGCGCTGAAGAAAGCTCTGATTCCCACAGAAGCGGGCTTTGAGGAAATAATCGATG GCATCAAGTTTGTGTTGGCCAGTCACTACATGACAGGAAGAACCTTACACCTAGATGGCGGCAGACATTTGAAGTAA
Upstream 100 bases:
>100_bases TTAAATCCAGAGGCGTCATGGATGCAAACTCTGAAACCTCAACGACTGCACTCGGTGGCATTTTCAAAACTAACCCTCAA ACCAGAGCTGAGTTTTTACG
Downstream 100 bases:
>100_bases TGCGCTTACATTGTCTGCTACCTAAAACGGCTGCTATATAGCGAATGCGGTTAACTAGGAACCGCTATAAGCTAGAAATT CTTATAACCTAGAAACTGCT
Product: short chain dehydrogenase
Products: NA
Alternate protein names: DHFR [H]
Number of amino acids: Translated: 238; Mature: 237
Protein sequence:
>238_residues MSETILITGVGKRLGFALAQQLLADGYNVVGTYRNDYPQLQLLRDSGADLQQVDFYQQSSLEGFLDYVGQEYKTLRAVIH NASDWKPESKKDPSDNASQIMHQMMTIHATVPYLFNLTLKDQLMSGDETSDIIHISDYVAEKGSKKHIAYAASKAALNNL TLSFSAMLAPKVKVNTLSPAMIKFNEHDDEAYKTKALKKALIPTEAGFEEIIDGIKFVLASHYMTGRTLHLDGGRHLK
Sequences:
>Translated_238_residues MSETILITGVGKRLGFALAQQLLADGYNVVGTYRNDYPQLQLLRDSGADLQQVDFYQQSSLEGFLDYVGQEYKTLRAVIH NASDWKPESKKDPSDNASQIMHQMMTIHATVPYLFNLTLKDQLMSGDETSDIIHISDYVAEKGSKKHIAYAASKAALNNL TLSFSAMLAPKVKVNTLSPAMIKFNEHDDEAYKTKALKKALIPTEAGFEEIIDGIKFVLASHYMTGRTLHLDGGRHLK >Mature_237_residues SETILITGVGKRLGFALAQQLLADGYNVVGTYRNDYPQLQLLRDSGADLQQVDFYQQSSLEGFLDYVGQEYKTLRAVIHN ASDWKPESKKDPSDNASQIMHQMMTIHATVPYLFNLTLKDQLMSGDETSDIIHISDYVAEKGSKKHIAYAASKAALNNLT LSFSAMLAPKVKVNTLSPAMIKFNEHDDEAYKTKALKKALIPTEAGFEEIIDGIKFVLASHYMTGRTLHLDGGRHLK
Specific function: Catalyzes the reduction of dihydrofolate to tetrahydrofolate [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family. FolM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787891, Length=235, Percent_Identity=46.8085106382979, Blast_Score=215, Evalue=2e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.5.1.3 [H]
Molecular weight: Translated: 26500; Mature: 26368
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETILITGVGKRLGFALAQQLLADGYNVVGTYRNDYPQLQLLRDSGADLQQVDFYQQSS CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHH LEGFLDYVGQEYKTLRAVIHNASDWKPESKKDPSDNASQIMHQMMTIHATVPYLFNLTLK HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEHH DQLMSGDETSDIIHISDYVAEKGSKKHIAYAASKAALNNLTLSFSAMLAPKVKVNTLSPA HHHCCCCCCCCEEEEHHHHHCCCCCCHHHHHHHHHHHHHHEEEEHHHHCCCEEEECCCCE MIKFNEHDDEAYKTKALKKALIPTEAGFEEIIDGIKFVLASHYMTGRTLHLDGGRHLK EEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC >Mature Secondary Structure SETILITGVGKRLGFALAQQLLADGYNVVGTYRNDYPQLQLLRDSGADLQQVDFYQQSS CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHH LEGFLDYVGQEYKTLRAVIHNASDWKPESKKDPSDNASQIMHQMMTIHATVPYLFNLTLK HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEHH DQLMSGDETSDIIHISDYVAEKGSKKHIAYAASKAALNNLTLSFSAMLAPKVKVNTLSPA HHHCCCCCCCCEEEEHHHHHCCCCCCHHHHHHHHHHHHHHEEEEHHHHCCCEEEECCCCE MIKFNEHDDEAYKTKALKKALIPTEAGFEEIIDGIKFVLASHYMTGRTLHLDGGRHLK EEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA