Definition Vibrio splendidus LGP32 chromosome 1, complete genome.
Accession NC_011753
Length 3,299,303

Click here to switch to the map view.

The map label for this gene is 218709722

Identifier: 218709722

GI number: 218709722

Start: 1860877

End: 1861614

Strand: Reverse

Name: 218709722

Synonym: VS_1733

Alternate gene names: NA

Gene position: 1861614-1860877 (Counterclockwise)

Preceding gene: 218709727

Following gene: 218709720

Centisome position: 56.42

GC content: 45.66

Gene sequence:

>738_bases
ATGTATCAAGGAGATGACGTAATGAATGCCGTGTTAACGAAACCTGTGACAACCGATAATAATCAGCCACTTAACATTGG
TTCTGCTGCAAGTATCAAGGTTCATGCGAATCATGCTCCATGCTATAGCGCTTCTGAGCAGCCAACGGTGCTGGCAGACA
TCTATCAAAGCAATGTCAATATTGCGATTTGGCAGCGTACATTTGATGAAGATTTAACAATGGCAATCAGTGAATTTATC
GCCTTGAATCCAAACTTCAGTAAATCTATGAGCCTGTCTCCAGACAACGCCTATGAGAAATTGGAGTTTGCTACCGACGA
AACCGCATCTAAAGCACTACTAGAAAACATGGTAGAGCTGGTGGATATGTTCTGTTGTTTGTTTGATCTTGAAGAAGTAG
GGCTCCGTTTAGCGGTTCTGAATAAAGCGATGTGTCCACGCTTCCATGTTGACCAAGTCCCTTGCCGTTTAGTGACTACC
TATCATGGTGTTGCCACTCAATGGCTGCCAAACGACTTGGTCGACCGTACGAAGCTAGGAAGAGGGAGTAACGGAAAGCC
AGATTCAGAGTCAGGCTTGTACAGTCATGAGTCGGATATCGAGCAACTTTCGAGTGGTGATGTGGCATTGCTTAAAGGGG
AGCGATGGAGTGGCAACGAAAACGCGGGTCTGGTGCATTGCTCACCCGTAACTTCATCTAACGAGACGCGATTGTTGCTG
ACGTTAGATTTTGGTTAG

Upstream 100 bases:

>100_bases
ATGCCAAGTTGCTTGTGATATTTTGGTTATGTTATAACATAACCAAAATATCACTCTTACTGAGAATAACGTTCGTATCG
GTAAGAGGAAAACAACAAGC

Downstream 100 bases:

>100_bases
TCGCGCTCTATTCGCGAGACGATTTTTAGAAGTCGTCGGCTTACCCCTTTTGTACATCCGGTTTTATACTCGTCAAACCT
ATTAATTTACGCCAACACTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MYQGDDVMNAVLTKPVTTDNNQPLNIGSAASIKVHANHAPCYSASEQPTVLADIYQSNVNIAIWQRTFDEDLTMAISEFI
ALNPNFSKSMSLSPDNAYEKLEFATDETASKALLENMVELVDMFCCLFDLEEVGLRLAVLNKAMCPRFHVDQVPCRLVTT
YHGVATQWLPNDLVDRTKLGRGSNGKPDSESGLYSHESDIEQLSSGDVALLKGERWSGNENAGLVHCSPVTSSNETRLLL
TLDFG

Sequences:

>Translated_245_residues
MYQGDDVMNAVLTKPVTTDNNQPLNIGSAASIKVHANHAPCYSASEQPTVLADIYQSNVNIAIWQRTFDEDLTMAISEFI
ALNPNFSKSMSLSPDNAYEKLEFATDETASKALLENMVELVDMFCCLFDLEEVGLRLAVLNKAMCPRFHVDQVPCRLVTT
YHGVATQWLPNDLVDRTKLGRGSNGKPDSESGLYSHESDIEQLSSGDVALLKGERWSGNENAGLVHCSPVTSSNETRLLL
TLDFG
>Mature_245_residues
MYQGDDVMNAVLTKPVTTDNNQPLNIGSAASIKVHANHAPCYSASEQPTVLADIYQSNVNIAIWQRTFDEDLTMAISEFI
ALNPNFSKSMSLSPDNAYEKLEFATDETASKALLENMVELVDMFCCLFDLEEVGLRLAVLNKAMCPRFHVDQVPCRLVTT
YHGVATQWLPNDLVDRTKLGRGSNGKPDSESGLYSHESDIEQLSSGDVALLKGERWSGNENAGLVHCSPVTSSNETRLLL
TLDFG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26934; Mature: 26934

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQGDDVMNAVLTKPVTTDNNQPLNIGSAASIKVHANHAPCYSASEQPTVLADIYQSNVN
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEHHHCCCC
IAIWQRTFDEDLTMAISEFIALNPNFSKSMSLSPDNAYEKLEFATDETASKALLENMVEL
EEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH
VDMFCCLFDLEEVGLRLAVLNKAMCPRFHVDQVPCRLVTTYHGVATQWLPNDLVDRTKLG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHCHHHHCCCHHHHHHHHCC
RGSNGKPDSESGLYSHESDIEQLSSGDVALLKGERWSGNENAGLVHCSPVTSSNETRLLL
CCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEE
TLDFG
EEECC
>Mature Secondary Structure
MYQGDDVMNAVLTKPVTTDNNQPLNIGSAASIKVHANHAPCYSASEQPTVLADIYQSNVN
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEHHHCCCC
IAIWQRTFDEDLTMAISEFIALNPNFSKSMSLSPDNAYEKLEFATDETASKALLENMVEL
EEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH
VDMFCCLFDLEEVGLRLAVLNKAMCPRFHVDQVPCRLVTTYHGVATQWLPNDLVDRTKLG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHCHHHHCCCHHHHHHHHCC
RGSNGKPDSESGLYSHESDIEQLSSGDVALLKGERWSGNENAGLVHCSPVTSSNETRLLL
CCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEE
TLDFG
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA