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The map label for this gene is cph2 [H]

Identifier: 218709674

GI number: 218709674

Start: 1810689

End: 1811759

Strand: Reverse

Name: cph2 [H]

Synonym: VS_1685

Alternate gene names: 218709674

Gene position: 1811759-1810689 (Counterclockwise)

Preceding gene: 218709676

Following gene: 218709671

Centisome position: 54.91

GC content: 41.64

Gene sequence:

>1071_bases
ATGCACCAAGCTAATGAAAGTGAAGTTGTTATACGTCGTTTGTATCAAATCACCAATGATTATCGAAAAGGGTTCGATAT
TCAGATCGCTCAGCTGCTTATCATGGGGCTTGAACGCTTCAACCTTGATATTGGTATCTTATCTAAAGTCGAGGGTAATA
CTTACTTAGTTGAACACTCTGTCACACCTGAAGGGGTTGAGCTCAATAGTGGCGATATCTTCGACTATAGTTCGACCTAT
TGTGAGATTACGTGCAAATCTGTTGGCCCTATTTGTATTGAGCATTGCGGCAAACATGACAAGTATGCGACACACCCTGC
CTACCAATCTTTTGGGCTAGAGTCTTACATTGGTATCCCGATTTTCGTCAATGATGAGCTTTATGGCACCTTAAACTTTT
CAAGCCCAGCTCCCTATCATCGCGAGTTTAAAGAGTTCGATATCGACGTCATGCGGTTAATGGCGTCATGGATCGAAGTG
GAACTCGTGAGAAGACAGCAAGAACGAAAACTCAAAGAGCTGAATGAGAAGTTAGAGTACCAAGCTCTGTATGATCCTCT
GACCCATTTGCCAAATAGACGTTGCTTGTTCAAAACGTTGAATGCAGAAGTGGAGCAGTTAAAAGGATCTTTAGGAAAGG
GAACCTTAGCGGTTGTCGACATCGATTTCTTTAAACAGGTCAATGACACTTATGGCCACCAAATGGGTGACGTTGTTTTA
AAGAAAGTGGCAAACGTTCTGCGCAATAATATTCAAGATGGAGAGTTTGTGGCGCGTTTTGGTGGTGAAGAGTTCATTCT
TTGGTATCCAAATAGTACACCAAGTTGTGTTGAAGATAAGTTCATGACTCTTTTACAAGAAATGAAGAAAATTACACTAG
ATAGTAAGCCTATCACCATATCAATCGGTGCGTGTCATTTTGAGTTGAGCACTGGAGATAGCAAAGGGGAGAGAATGTCG
GCATTAGACTCGCTAATCAAAGTTGCCGATGAATGCCTGTACATTGCTAAACAAAATGGACGAGATCAGTTTATATCTCG
CCCATATCATCAAGAACACTCAGACTCGTAA

Upstream 100 bases:

>100_bases
TTAATGAGGTATCTTGCATAAAAACTAATTGATTAATATATAATTTACAGTAGGCCACACGTAATATTGCCAATCAGTTC
TCCGTCGTAGGATCACAGTT

Downstream 100 bases:

>100_bases
GTTGAAGCTGTCAGCTCTTAAAGCTCAAAGGTTAGTTCTTAACTGAATAGATAAGGGAACAACTTACGACGCTCTTCGGG
TGTTAAAGATTCAACTCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MHQANESEVVIRRLYQITNDYRKGFDIQIAQLLIMGLERFNLDIGILSKVEGNTYLVEHSVTPEGVELNSGDIFDYSSTY
CEITCKSVGPICIEHCGKHDKYATHPAYQSFGLESYIGIPIFVNDELYGTLNFSSPAPYHREFKEFDIDVMRLMASWIEV
ELVRRQQERKLKELNEKLEYQALYDPLTHLPNRRCLFKTLNAEVEQLKGSLGKGTLAVVDIDFFKQVNDTYGHQMGDVVL
KKVANVLRNNIQDGEFVARFGGEEFILWYPNSTPSCVEDKFMTLLQEMKKITLDSKPITISIGACHFELSTGDSKGERMS
ALDSLIKVADECLYIAKQNGRDQFISRPYHQEHSDS

Sequences:

>Translated_356_residues
MHQANESEVVIRRLYQITNDYRKGFDIQIAQLLIMGLERFNLDIGILSKVEGNTYLVEHSVTPEGVELNSGDIFDYSSTY
CEITCKSVGPICIEHCGKHDKYATHPAYQSFGLESYIGIPIFVNDELYGTLNFSSPAPYHREFKEFDIDVMRLMASWIEV
ELVRRQQERKLKELNEKLEYQALYDPLTHLPNRRCLFKTLNAEVEQLKGSLGKGTLAVVDIDFFKQVNDTYGHQMGDVVL
KKVANVLRNNIQDGEFVARFGGEEFILWYPNSTPSCVEDKFMTLLQEMKKITLDSKPITISIGACHFELSTGDSKGERMS
ALDSLIKVADECLYIAKQNGRDQFISRPYHQEHSDS
>Mature_356_residues
MHQANESEVVIRRLYQITNDYRKGFDIQIAQLLIMGLERFNLDIGILSKVEGNTYLVEHSVTPEGVELNSGDIFDYSSTY
CEITCKSVGPICIEHCGKHDKYATHPAYQSFGLESYIGIPIFVNDELYGTLNFSSPAPYHREFKEFDIDVMRLMASWIEV
ELVRRQQERKLKELNEKLEYQALYDPLTHLPNRRCLFKTLNAEVEQLKGSLGKGTLAVVDIDFFKQVNDTYGHQMGDVVL
KKVANVLRNNIQDGEFVARFGGEEFILWYPNSTPSCVEDKFMTLLQEMKKITLDSKPITISIGACHFELSTGDSKGERMS
ALDSLIKVADECLYIAKQNGRDQFISRPYHQEHSDS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=33.5227272727273, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI145693134, Length=179, Percent_Identity=31.8435754189944, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081977, Length=255, Percent_Identity=27.4509803921569, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87082007, Length=199, Percent_Identity=31.1557788944724, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=37.037037037037, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786584, Length=226, Percent_Identity=26.9911504424779, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787056, Length=164, Percent_Identity=36.5853658536585, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787802, Length=188, Percent_Identity=30.8510638297872, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=30.7692307692308, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787541, Length=193, Percent_Identity=29.0155440414508, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081974, Length=201, Percent_Identity=26.865671641791, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788381, Length=100, Percent_Identity=34, Blast_Score=75, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 40709; Mature: 40709

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQANESEVVIRRLYQITNDYRKGFDIQIAQLLIMGLERFNLDIGILSKVEGNTYLVEHS
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEC
VTPEGVELNSGDIFDYSSTYCEITCKSVGPICIEHCGKHDKYATHPAYQSFGLESYIGIP
CCCCCEECCCCCEECCCCCEEEEEECCCCCHHHHHCCCCCCCCCCCHHHHCCCHHHCCCE
IFVNDELYGTLNFSSPAPYHREFKEFDIDVMRLMASWIEVELVRRQQERKLKELNEKLEY
EEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QALYDPLTHLPNRRCLFKTLNAEVEQLKGSLGKGTLAVVDIDFFKQVNDTYGHQMGDVVL
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
KKVANVLRNNIQDGEFVARFGGEEFILWYPNSTPSCVEDKFMTLLQEMKKITLDSKPITI
HHHHHHHHCCCCCCHHHEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
SIGACHFELSTGDSKGERMSALDSLIKVADECLYIAKQNGRDQFISRPYHQEHSDS
EEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCC
>Mature Secondary Structure
MHQANESEVVIRRLYQITNDYRKGFDIQIAQLLIMGLERFNLDIGILSKVEGNTYLVEHS
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEC
VTPEGVELNSGDIFDYSSTYCEITCKSVGPICIEHCGKHDKYATHPAYQSFGLESYIGIP
CCCCCEECCCCCEECCCCCEEEEEECCCCCHHHHHCCCCCCCCCCCHHHHCCCHHHCCCE
IFVNDELYGTLNFSSPAPYHREFKEFDIDVMRLMASWIEVELVRRQQERKLKELNEKLEY
EEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QALYDPLTHLPNRRCLFKTLNAEVEQLKGSLGKGTLAVVDIDFFKQVNDTYGHQMGDVVL
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
KKVANVLRNNIQDGEFVARFGGEEFILWYPNSTPSCVEDKFMTLLQEMKKITLDSKPITI
HHHHHHHHCCCCCCHHHEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
SIGACHFELSTGDSKGERMSALDSLIKVADECLYIAKQNGRDQFISRPYHQEHSDS
EEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]