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The map label for this gene is ydaM [H]

Identifier: 218709621

GI number: 218709621

Start: 1748773

End: 1750098

Strand: Direct

Name: ydaM [H]

Synonym: VS_1631

Alternate gene names: 218709621

Gene position: 1748773-1750098 (Clockwise)

Preceding gene: 218709611

Following gene: 218709622

Centisome position: 53.0

GC content: 44.72

Gene sequence:

>1326_bases
ATGAGCATCCAACTAGATTTAACCACAGCCACCCCTAGGCAGAATTTCGACTCTGCACAGGGCTATATTACGCTGCAAGA
CCACCGTGTCATCGATGTCGACGAAAACATTGCAAAAATCTTCGGTTACAGTTGCCGTGAAGCACTTCTCAACAACGTCG
ATTTTGTCTACTCATTAATACCCAAAGATTATCACGGCTCTGTCCGTGAACGTTACCTTTCTGCGATTAAAGGCCAACTG
GGAAAGGGAAAGCTCTATAAAGATATTCCGGTGAATAACCGCCTTCTCTCGCTGTTTAGCCTTGCTCAAGCGGTCAGAGT
CAACGACCGCCCCGCTCTTCGTGTAATGATCATAGATATTACCTCAGTTGTTGCTTCAGAGCGTAAACATCAAGAAAAAG
ATCGTATGTACCGGACTTTACTCAATAGTTCGAAACAGGGCGTGCTCGTCCACCAAAATTTCAAGCCTCTAATGGTTAAT
CAAGCCTGGGTTGAAATGCAGGGTGCCAAATCGATAGAAGCAGTGCTCGCCATGGACTCAATCATTTCAATTATTCCGCC
GGACAGTCGTATCAATGCCATGAGACGCAGCCAGAGTATTCTTGCCGGTGATACACCAAGCTTCAGTTCTGTGGTTGAAA
ACCAATGCTTTGACGGGAGTAAAAAACACTTCAACATCTACGACAACATCATTAATTGGGAAGGCGAGAAAGCGATTCAA
GTGGTGATAGAAGACGTTTCCGACAAGGTGATATTAGAACAAGAGCTACTGCACCGCGCACTTCACGACGATCTAACACA
AGTGTTCAGCCGCAGTGCCATTTACGATTGGTTAAAAAAGCCGTTAAAAGAACAAACTGAGATGTCTTGTTTACTATTGG
ATATTGATGACTTCAAAAAGATTAATGACCAATTTGGACACAGTGTTGGTGACGATGTGATTCGTACTCTCGCGAATACC
ATCAAGAAGCACGTCAAAGCCTTGAACGGCGTGGTTGGCCGCTGGGGAGGTGAAGAGTTTATCGTCTTCTTTCCAAAAAA
CCGAACGACTCATGGAACCATTCTCAACACGGCATACTCACAAGCAAAAATTGTTGGTCAACGTATTTGCGAAGAATTTC
GAACCCATCAATTCTTGGGATTTAATCGCACCAAGTTTCAATCAAGCGTCAGTATTGGCATTACCGACAGCTGCATCGTT
CGTACCAACAACTCCCTAGATACGTTGATTCGAGTTACAGACGACGCGCTCTATCGTGCTAAATCCAACGGAAAAAATAG
AGTCTCTGTAAACCACGAAGGTGCATGTGTAGAGTGTGGCTCGTGA

Upstream 100 bases:

>100_bases
CTGATAGCTTTGTCGATATACAGCAGTCACAATTTATTTACGACACCACCATTTATTTAAAGCACCTGTTTTTGGTGAGA
GGATATGTAGTCAGATCTAT

Downstream 100 bases:

>100_bases
AACAATTGCTAAGCATCAAGAAAAGGTCATTTAAGCTTATAAGTTGACCCAAGATTTTCTTGTTATTTTTAAGTTCTAGT
TTACTATGCGCCACCCCAAT

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 440

Protein sequence:

>441_residues
MSIQLDLTTATPRQNFDSAQGYITLQDHRVIDVDENIAKIFGYSCREALLNNVDFVYSLIPKDYHGSVRERYLSAIKGQL
GKGKLYKDIPVNNRLLSLFSLAQAVRVNDRPALRVMIIDITSVVASERKHQEKDRMYRTLLNSSKQGVLVHQNFKPLMVN
QAWVEMQGAKSIEAVLAMDSIISIIPPDSRINAMRRSQSILAGDTPSFSSVVENQCFDGSKKHFNIYDNIINWEGEKAIQ
VVIEDVSDKVILEQELLHRALHDDLTQVFSRSAIYDWLKKPLKEQTEMSCLLLDIDDFKKINDQFGHSVGDDVIRTLANT
IKKHVKALNGVVGRWGGEEFIVFFPKNRTTHGTILNTAYSQAKIVGQRICEEFRTHQFLGFNRTKFQSSVSIGITDSCIV
RTNNSLDTLIRVTDDALYRAKSNGKNRVSVNHEGACVECGS

Sequences:

>Translated_441_residues
MSIQLDLTTATPRQNFDSAQGYITLQDHRVIDVDENIAKIFGYSCREALLNNVDFVYSLIPKDYHGSVRERYLSAIKGQL
GKGKLYKDIPVNNRLLSLFSLAQAVRVNDRPALRVMIIDITSVVASERKHQEKDRMYRTLLNSSKQGVLVHQNFKPLMVN
QAWVEMQGAKSIEAVLAMDSIISIIPPDSRINAMRRSQSILAGDTPSFSSVVENQCFDGSKKHFNIYDNIINWEGEKAIQ
VVIEDVSDKVILEQELLHRALHDDLTQVFSRSAIYDWLKKPLKEQTEMSCLLLDIDDFKKINDQFGHSVGDDVIRTLANT
IKKHVKALNGVVGRWGGEEFIVFFPKNRTTHGTILNTAYSQAKIVGQRICEEFRTHQFLGFNRTKFQSSVSIGITDSCIV
RTNNSLDTLIRVTDDALYRAKSNGKNRVSVNHEGACVECGS
>Mature_440_residues
SIQLDLTTATPRQNFDSAQGYITLQDHRVIDVDENIAKIFGYSCREALLNNVDFVYSLIPKDYHGSVRERYLSAIKGQLG
KGKLYKDIPVNNRLLSLFSLAQAVRVNDRPALRVMIIDITSVVASERKHQEKDRMYRTLLNSSKQGVLVHQNFKPLMVNQ
AWVEMQGAKSIEAVLAMDSIISIIPPDSRINAMRRSQSILAGDTPSFSSVVENQCFDGSKKHFNIYDNIINWEGEKAIQV
VIEDVSDKVILEQELLHRALHDDLTQVFSRSAIYDWLKKPLKEQTEMSCLLLDIDDFKKINDQFGHSVGDDVIRTLANTI
KKHVKALNGVVGRWGGEEFIVFFPKNRTTHGTILNTAYSQAKIVGQRICEEFRTHQFLGFNRTKFQSSVSIGITDSCIVR
TNNSLDTLIRVTDDALYRAKSNGKNRVSVNHEGACVECGS

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=216, Percent_Identity=35.6481481481481, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787802, Length=185, Percent_Identity=34.0540540540541, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082007, Length=193, Percent_Identity=32.1243523316062, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787262, Length=181, Percent_Identity=32.0441988950276, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI145693134, Length=194, Percent_Identity=28.8659793814433, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787056, Length=176, Percent_Identity=31.25, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788381, Length=325, Percent_Identity=25.2307692307692, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788085, Length=178, Percent_Identity=32.0224719101124, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787816, Length=220, Percent_Identity=28.6363636363636, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787541, Length=188, Percent_Identity=26.5957446808511, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 49813; Mature: 49682

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIQLDLTTATPRQNFDSAQGYITLQDHRVIDVDENIAKIFGYSCREALLNNVDFVYSLI
CEEEEEEEECCCCCCCCCCCCEEEEECCEEEECCHHHHHHHCHHHHHHHHCCHHHHHHHC
PKDYHGSVRERYLSAIKGQLGKGKLYKDIPVNNRLLSLFSLAQAVRVNDRPALRVMIIDI
CCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEH
TSVVASERKHQEKDRMYRTLLNSSKQGVLVHQNFKPLMVNQAWVEMQGAKSIEAVLAMDS
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEECHHHHHHCCCHHHHHHHHHHH
IISIIPPDSRINAMRRSQSILAGDTPSFSSVVENQCFDGSKKHFNIYDNIINWEGEKAIQ
HHHHCCCCHHHHHHHHHCHHHCCCCCCHHHHHHHHCCCCCCCCEEHHHHHHCCCCCHHHH
VVIEDVSDKVILEQELLHRALHDDLTQVFSRSAIYDWLKKPLKEQTEMSCLLLDIDDFKK
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
INDQFGHSVGDDVIRTLANTIKKHVKALNGVVGRWGGEEFIVFFPKNRTTHGTILNTAYS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEHHHHH
QAKIVGQRICEEFRTHQFLGFNRTKFQSSVSIGITDSCIVRTNNSLDTLIRVTDDALYRA
HHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEECCCCCEEEEECCCHHHHEEEHHHHHHHH
KSNGKNRVSVNHEGACVECGS
HCCCCCEEEECCCCCEEECCC
>Mature Secondary Structure 
SIQLDLTTATPRQNFDSAQGYITLQDHRVIDVDENIAKIFGYSCREALLNNVDFVYSLI
EEEEEEEECCCCCCCCCCCCEEEEECCEEEECCHHHHHHHCHHHHHHHHCCHHHHHHHC
PKDYHGSVRERYLSAIKGQLGKGKLYKDIPVNNRLLSLFSLAQAVRVNDRPALRVMIIDI
CCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEH
TSVVASERKHQEKDRMYRTLLNSSKQGVLVHQNFKPLMVNQAWVEMQGAKSIEAVLAMDS
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEECHHHHHHCCCHHHHHHHHHHH
IISIIPPDSRINAMRRSQSILAGDTPSFSSVVENQCFDGSKKHFNIYDNIINWEGEKAIQ
HHHHCCCCHHHHHHHHHCHHHCCCCCCHHHHHHHHCCCCCCCCEEHHHHHHCCCCCHHHH
VVIEDVSDKVILEQELLHRALHDDLTQVFSRSAIYDWLKKPLKEQTEMSCLLLDIDDFKK
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
INDQFGHSVGDDVIRTLANTIKKHVKALNGVVGRWGGEEFIVFFPKNRTTHGTILNTAYS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEHHHHH
QAKIVGQRICEEFRTHQFLGFNRTKFQSSVSIGITDSCIVRTNNSLDTLIRVTDDALYRA
HHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEECCCCCEEEEECCCHHHHEEEHHHHHHHH
KSNGKNRVSVNHEGACVECGS
HCCCCCEEEECCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]