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The map label for this gene is rsuA [H]

Identifier: 218709591

GI number: 218709591

Start: 1721059

End: 1721784

Strand: Reverse

Name: rsuA [H]

Synonym: VS_1601

Alternate gene names: 218709591

Gene position: 1721784-1721059 (Counterclockwise)

Preceding gene: 218709592

Following gene: 218709590

Centisome position: 52.19

GC content: 44.49

Gene sequence:

>726_bases
TTGTGCGAAATGTGGCGCAGACGATTAATGCGCCTTGATAAATACCTTTGTAAAAGCACAGAACTAACAAAACTCGAAGC
CGTTCAGCGAATCCAAAACGGTGAGGTGAGTGTGAACAGCGTGGTTGTGCTAGACGAGTCTACTCAGGTTCATGAAAGTA
ACGCTATCCTGCTTAATGGTGATGCATTAACGCTACGAGAGTTTAGATACATCTTAATGCACAAGCCTGCGGGTACTATT
TGCTCCAATATCGATGAAGTGTACCCATCGCTTTTCAATTACCTAGAGTTAGAGAAAGCATCTGAACTGCACATCGCAGG
GCGCTTAGATGCAGACACTACAGGCTTAGTCTTGATTACCGATGATGGGCGATGGTCATTCAACATCACTCTGCCAACCA
AGTCATGTAAGAAGGTGTACCGCGTGATATTGTCACGAGATATCAAAGATGATGTCGCTGACAAGTTCAAAGCGGGCATT
CAATTGCAGGGTGAACAAAAACTGACGCGTCCGGCAGAACTCGAAGTGATTACCAGTAAAGAAGTGCTGTTGACCATTAC
AGAAGGTAAGTTTCATCAAGTAAAACGAATGTTTGCTGCGGTAGGGAATCGAGTTGTTGGACTACACCGTGAGCAGATTG
GTGATGTTCGTTTAGATGTTGAAGCAGGTCAGTGGCGTTATCTAACTAAAGCCGAAGTCGACTCATTTCAGCAAGACTCT
GAATAA

Upstream 100 bases:

>100_bases
ACGCAAAGAAACAGAAAGACGCTTACCCAAAATTGGCGCTATGTGATAACTGCGTTAGAGACTATGTGGTGATTGCTCAA
GGAGAACGTACCTATAAGCC

Downstream 100 bases:

>100_bases
ACGCTGTAACCACTTAAAGCGTTAAGCGTGTCAGGACCAGAATATCAGCACTATAAGGATGTAAGATGGAAAACCTTAAA
GTCTCGGAAATTAAGTCTTT

Product: 16S rRNA uridine-516 pseudouridylate synthase

Products: pseudouridine 5'-phosphate; H2O [C]

Alternate protein names: 16S pseudouridine 516 synthase; 16S pseudouridylate 516 synthase; rRNA pseudouridylate synthase A; rRNA-uridine isomerase A [H]

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MCEMWRRRLMRLDKYLCKSTELTKLEAVQRIQNGEVSVNSVVVLDESTQVHESNAILLNGDALTLREFRYILMHKPAGTI
CSNIDEVYPSLFNYLELEKASELHIAGRLDADTTGLVLITDDGRWSFNITLPTKSCKKVYRVILSRDIKDDVADKFKAGI
QLQGEQKLTRPAELEVITSKEVLLTITEGKFHQVKRMFAAVGNRVVGLHREQIGDVRLDVEAGQWRYLTKAEVDSFQQDS
E

Sequences:

>Translated_241_residues
MCEMWRRRLMRLDKYLCKSTELTKLEAVQRIQNGEVSVNSVVVLDESTQVHESNAILLNGDALTLREFRYILMHKPAGTI
CSNIDEVYPSLFNYLELEKASELHIAGRLDADTTGLVLITDDGRWSFNITLPTKSCKKVYRVILSRDIKDDVADKFKAGI
QLQGEQKLTRPAELEVITSKEVLLTITEGKFHQVKRMFAAVGNRVVGLHREQIGDVRLDVEAGQWRYLTKAEVDSFQQDS
E
>Mature_241_residues
MCEMWRRRLMRLDKYLCKSTELTKLEAVQRIQNGEVSVNSVVVLDESTQVHESNAILLNGDALTLREFRYILMHKPAGTI
CSNIDEVYPSLFNYLELEKASELHIAGRLDADTTGLVLITDDGRWSFNITLPTKSCKKVYRVILSRDIKDDVADKFKAGI
QLQGEQKLTRPAELEVITSKEVLLTITEGKFHQVKRMFAAVGNRVVGLHREQIGDVRLDVEAGQWRYLTKAEVDSFQQDS
E

Specific function: Responsible for synthesis of pseudouridine from uracil- 516 in 16S ribosomal RNA [H]

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788510, Length=229, Percent_Identity=44.5414847161572, Blast_Score=204, Evalue=5e-54,
Organism=Escherichia coli, GI1787524, Length=244, Percent_Identity=27.0491803278689, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1790453, Length=235, Percent_Identity=26.3829787234043, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081838, Length=179, Percent_Identity=29.0502793296089, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: 4.2.1.70 [C]

Molecular weight: Translated: 27488; Mature: 27488

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCEMWRRRLMRLDKYLCKSTELTKLEAVQRIQNGEVSVNSVVVLDESTQVHESNAILLNG
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCEECCCEEEEEC
DALTLREFRYILMHKPAGTICSNIDEVYPSLFNYLELEKASELHIAGRLDADTTGLVLIT
CEEEHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEE
DDGRWSFNITLPTKSCKKVYRVILSRDIKDDVADKFKAGIQLQGEQKLTRPAELEVITSK
CCCCEEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCCCEEEEEECC
EVLLTITEGKFHQVKRMFAAVGNRVVGLHREQIGDVRLDVEAGQWRYLTKAEVDSFQQDS
EEEEEEECCHHHHHHHHHHHHCCCEEEEHHHHCCCEEEEEECCCEEEEEHHHHHHHCCCC
E
C
>Mature Secondary Structure
MCEMWRRRLMRLDKYLCKSTELTKLEAVQRIQNGEVSVNSVVVLDESTQVHESNAILLNG
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCEECCCEEEEEC
DALTLREFRYILMHKPAGTICSNIDEVYPSLFNYLELEKASELHIAGRLDADTTGLVLIT
CEEEHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEE
DDGRWSFNITLPTKSCKKVYRVILSRDIKDDVADKFKAGIQLQGEQKLTRPAELEVITSK
CCCCEEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCCCEEEEEECC
EVLLTITEGKFHQVKRMFAAVGNRVVGLHREQIGDVRLDVEAGQWRYLTKAEVDSFQQDS
EEEEEEECCHHHHHHHHHHHHCCCEEEEHHHHCCCEEEEEECCCEEEEEHHHHHHHCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: uracil; D-ribose phosphate [C]

Specific reaction: uracil + D-ribose phosphate = pseudouridine 5'-phosphate + H2O [C]

General reaction: addition of H2O; elimination of H2O; C-O bond cleavage [C]

Inhibitor: 1-(Tetrahydro-2-furanyl)-5-fluorouracil; 5-fluorouracil [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]