Definition Vibrio splendidus LGP32 chromosome 1, complete genome.
Accession NC_011753
Length 3,299,303

Click here to switch to the map view.

The map label for this gene is 218709546

Identifier: 218709546

GI number: 218709546

Start: 1688603

End: 1688797

Strand: Direct

Name: 218709546

Synonym: VS_1555

Alternate gene names: NA

Gene position: 1688603-1688797 (Clockwise)

Preceding gene: 218709544

Following gene: 218709547

Centisome position: 51.18

GC content: 34.87

Gene sequence:

>195_bases
ATGGGCGCTAAACCGAACCCATCAATGTTCATTGATAAAAGACCTAGAACAAAAAACACACTCGATATAAGTGTAACCGA
TTTACTGCGAGATGATGAGCCCATAAGTAACCCGCTTTACATAACTAAAGAAAGAATAATACTGAGAACCTTTTACGCAT
ACTTTGAAATACTTAACAAATGCAATAGCTTATAA

Upstream 100 bases:

>100_bases
TGACTCTTCATAAGCATTAAATACATCGCTATTTTTACGACCGCTAAAGTGCAGAAAACTATGAATAATAAGCATAAAGA
AGGATATCAACACAACAAAT

Downstream 100 bases:

>100_bases
CGAAAAGTTAAAGCGTGAACAACGCAATACCGAAACTGCCACATTCCACCCTAAACACTAAATTCAAAGCATAGTAAAAA
TGCCACGCGTTGCGAATCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 64; Mature: 63

Protein sequence:

>64_residues
MGAKPNPSMFIDKRPRTKNTLDISVTDLLRDDEPISNPLYITKERIILRTFYAYFEILNKCNSL

Sequences:

>Translated_64_residues
MGAKPNPSMFIDKRPRTKNTLDISVTDLLRDDEPISNPLYITKERIILRTFYAYFEILNKCNSL
>Mature_63_residues
GAKPNPSMFIDKRPRTKNTLDISVTDLLRDDEPISNPLYITKERIILRTFYAYFEILNKCNSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7492; Mature: 7361

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAKPNPSMFIDKRPRTKNTLDISVTDLLRDDEPISNPLYITKERIILRTFYAYFEILNK
CCCCCCCCEEEECCCCCCCEEEEEHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHH
CNSL
HCCC
>Mature Secondary Structure 
GAKPNPSMFIDKRPRTKNTLDISVTDLLRDDEPISNPLYITKERIILRTFYAYFEILNK
CCCCCCCEEEECCCCCCCEEEEEHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHH
CNSL
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA