| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709490
Identifier: 218709490
GI number: 218709490
Start: 1634296
End: 1635102
Strand: Direct
Name: 218709490
Synonym: VS_1499
Alternate gene names: NA
Gene position: 1634296-1635102 (Clockwise)
Preceding gene: 218709487
Following gene: 218709491
Centisome position: 49.53
GC content: 45.6
Gene sequence:
>807_bases ATGAAAGCAATTCCCCTAACTATTGCAGCTCTATCTATCGTCAGTTACACGGCTAGCAGCGCGGAAGACACCACTCATAT CAAATTGGCGACAACCACAAGTACCTACCACTCAGGCTTACTGGACTACTTATTGCCTGAGTTCGAAAAGGATTCTGGTA TTAAGGTTGATGTTCTCGCTGCGGGTACGGGTAAATCACTTCGCATGGGTGAAAACGGTGACGTTGATTTGGTAATGACT CACGCACCAAAGGCTGAAGCCAACTTCGTTGAAAAAGGTTACGGCGTTTTACCTCGTAAGCTGATGTACAACGATTTTGT TATCGTTGGCCCACAAAGCGACCCTGCGAAGATTAAATCTCAAAAAGCAGTAGCTGATGTGTTCAAAGCAATCGCGAACA ACAACGTGACGTTTGTTTCTCGTGGAGACGACTCTGGTACTCATAAGAAAGAGATGGGTATTTGGGCGCAAACTAAGATG GAGCCAAACTTCGGCGGCTATCGCAGTGTTGGTCAAGGAATGGGCCCAACTCTGAACATGGCGTCTGAAATGCAAGGCTA CACCATGACAGACCGTGGTACTTGGTTGGCTTACCAAAACAAACTTGACCTTAAAGTGTTGTTCCAAGGCGACAAGAACC TATTTAACCCTTACCAAGTGATTCTTGTTAACCCAGAACGCTACCCAAGCATCAATTACCAAGCAGCGAAAGTATTCAGT GATTGGTTGGTTAACCCTAAAGGCCAGAAACTGATCAACGACTTTAAACTGCACGGCAAACAGCTGTTTGTTGCAAACGC AGAATAG
Upstream 100 bases:
>100_bases TCCTAATTACAACAATTAGCGTCTTATGCACATGCCCTTGTTTGAGCCCTTTAAAAATAGAGGCATGTCATTCATTTATA ACAGAATGGACATAATAATA
Downstream 100 bases:
>100_bases TTGGTTGCAAGCGCAGAATAGCTTGTTGTAAGAAATGAGTCGTGGGTTGTGAGTAAAGCGTAGCGTTGAAGGTTTAACCC TAACCAACTAGCGCTACGCT
Product: ABC transporter
Products: NA
Alternate protein names: Signal Peptide Protein; TUNGstate ABC Transporter Permease; Molybdate Or TUNGstate Transport; TUNGstate ABC Transporter Permease-Like Protein; TUNGstate Abc Transporter Permease; Signal Peptide; ABC-Type Transport Protein Permease Component; ABC Transporter; Basic Organic Compound ABC-Transporter; ABC Transporter Permease Protein; ABC TUNGstate Transporter Permease Component; ABC-Type Transport System Permease Component; ABC Transporter Periplasmic Protein; ABC-Type TUNGstate Transport System Permease Component-Like; Periplasmic Protein
Number of amino acids: Translated: 268; Mature: 268
Protein sequence:
>268_residues MKAIPLTIAALSIVSYTASSAEDTTHIKLATTTSTYHSGLLDYLLPEFEKDSGIKVDVLAAGTGKSLRMGENGDVDLVMT HAPKAEANFVEKGYGVLPRKLMYNDFVIVGPQSDPAKIKSQKAVADVFKAIANNNVTFVSRGDDSGTHKKEMGIWAQTKM EPNFGGYRSVGQGMGPTLNMASEMQGYTMTDRGTWLAYQNKLDLKVLFQGDKNLFNPYQVILVNPERYPSINYQAAKVFS DWLVNPKGQKLINDFKLHGKQLFVANAE
Sequences:
>Translated_268_residues MKAIPLTIAALSIVSYTASSAEDTTHIKLATTTSTYHSGLLDYLLPEFEKDSGIKVDVLAAGTGKSLRMGENGDVDLVMT HAPKAEANFVEKGYGVLPRKLMYNDFVIVGPQSDPAKIKSQKAVADVFKAIANNNVTFVSRGDDSGTHKKEMGIWAQTKM EPNFGGYRSVGQGMGPTLNMASEMQGYTMTDRGTWLAYQNKLDLKVLFQGDKNLFNPYQVILVNPERYPSINYQAAKVFS DWLVNPKGQKLINDFKLHGKQLFVANAE >Mature_268_residues MKAIPLTIAALSIVSYTASSAEDTTHIKLATTTSTYHSGLLDYLLPEFEKDSGIKVDVLAAGTGKSLRMGENGDVDLVMT HAPKAEANFVEKGYGVLPRKLMYNDFVIVGPQSDPAKIKSQKAVADVFKAIANNNVTFVSRGDDSGTHKKEMGIWAQTKM EPNFGGYRSVGQGMGPTLNMASEMQGYTMTDRGTWLAYQNKLDLKVLFQGDKNLFNPYQVILVNPERYPSINYQAAKVFS DWLVNPKGQKLINDFKLHGKQLFVANAE
Specific function: Unknown
COG id: COG2998
COG function: function code H; ABC-type tungstate transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29481; Mature: 29481
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAIPLTIAALSIVSYTASSAEDTTHIKLATTTSTYHSGLLDYLLPEFEKDSGIKVDVLA CCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCCEEEEEE AGTGKSLRMGENGDVDLVMTHAPKAEANFVEKGYGVLPRKLMYNDFVIVGPQSDPAKIKS ECCCCEEEECCCCCEEEEEECCCCCCHHHHHCCCCCCCHHEECCCEEEECCCCCCHHHHH QKAVADVFKAIANNNVTFVSRGDDSGTHKKEMGIWAQTKMEPNFGGYRSVGQGMGPTLNM HHHHHHHHHHHHCCCEEEEECCCCCCCCHHHCCCEEEEECCCCCCCHHHHCCCCCCCCCH ASEMQGYTMTDRGTWLAYQNKLDLKVLFQGDKNLFNPYQVILVNPERYPSINYQAAKVFS HHHCCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHH DWLVNPKGQKLINDFKLHGKQLFVANAE HHCCCCCCHHHHHHHHCCCEEEEEEECC >Mature Secondary Structure MKAIPLTIAALSIVSYTASSAEDTTHIKLATTTSTYHSGLLDYLLPEFEKDSGIKVDVLA CCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCCEEEEEE AGTGKSLRMGENGDVDLVMTHAPKAEANFVEKGYGVLPRKLMYNDFVIVGPQSDPAKIKS ECCCCEEEECCCCCEEEEEECCCCCCHHHHHCCCCCCCHHEECCCEEEECCCCCCHHHHH QKAVADVFKAIANNNVTFVSRGDDSGTHKKEMGIWAQTKMEPNFGGYRSVGQGMGPTLNM HHHHHHHHHHHHCCCEEEEECCCCCCCCHHHCCCEEEEECCCCCCCHHHHCCCCCCCCCH ASEMQGYTMTDRGTWLAYQNKLDLKVLFQGDKNLFNPYQVILVNPERYPSINYQAAKVFS HHHCCCCEEECCCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHH DWLVNPKGQKLINDFKLHGKQLFVANAE HHCCCCCCHHHHHHHHCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA