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The map label for this gene is fdhD [H]

Identifier: 218709483

GI number: 218709483

Start: 1624062

End: 1624883

Strand: Direct

Name: fdhD [H]

Synonym: VS_1492

Alternate gene names: 218709483

Gene position: 1624062-1624883 (Clockwise)

Preceding gene: 218709482

Following gene: 218709486

Centisome position: 49.22

GC content: 45.38

Gene sequence:

>822_bases
GTGGTAAAACCAAACATAATAAAAACTAGTGAAAACCCACTTCAAACAATCGAAGTTGAAGTGTTTGATGAATATGGTGA
GAAGCTAACCAAACAGATCGCTTGTGAACGCCCTCTTACCGTCATGTTGAACTGGAAAGAGATCGTAACCCTGATGACGC
TCGGCTCGCGTCCTGAATCTTTAGTCTTGGGTTATTTGAAGAACCAAAGCTTCCTTTCTGACCCTGAAGCGGTTGAATCT
ATCATCATCGATTGGGAAACCAGCTCTGCAGCGGTCATTACCAATGAAGATACGAGCCAGCTTGAGCAAGCGCTTAAGAA
GAAGACGGTGACCTCTGGCTGTGGTCAGGGCACTATGTTTGGTAACGTGATGAAGCAGTTGGAAGATTACCAAGTGCCTC
AAACCAAGATTAAGCAATCTGAAATCTATACCGCTCTAGAAGCGCTGACTCATTACAACGACACCTACAAGAAAGCTGGC
GCGGTACATGGTTGCGCAGTTTGCAAAGACGACAAGGTTCTATCGTTTGTTGAAGATGTTGGCCGTCACAATGCGGTAGA
TACGTTGGCTGGTGAGATGTGGCTTAACAAAGAGTCTGGTGAAGATAAGATTTTTTACACTACTGGCCGCCTGACTTCTG
AAATGGTCATCAAAGTGGCGCAGATGGGTATTCCTGTTCTGTTATCACGTTCAGGCGTAACGCAAATGGGTTTAGACTTG
GCTCAGCAATTTGGTATCACGACCATCGCTCGTGCTAAAGGCCTGCGTTTCCAAGTGTTCACTGGCGCAGAGAAGATTGA
ATTTGATGTGAAAGGTGAATAA

Upstream 100 bases:

>100_bases
TTAAGCATGAGTTAAAGAATCGATGAACAAGATCGGCGTTAGACCCTCTTGTTAACTTCTTATCTCTTTAAATCGCTATC
TCATTAAGTAGGACGTGACT

Downstream 100 bases:

>100_bases
TCAGCAGTCGGAAAAAAGCGTAGGTTCGATTGGAGATTCACTAACCGCTTCTAATTGTAAAGTTCTGATGTAAAGAGTTA
GTGACCCTTCAAGGATAGAT

Product: formate dehydrogenase, subunit fdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MVKPNIIKTSENPLQTIEVEVFDEYGEKLTKQIACERPLTVMLNWKEIVTLMTLGSRPESLVLGYLKNQSFLSDPEAVES
IIIDWETSSAAVITNEDTSQLEQALKKKTVTSGCGQGTMFGNVMKQLEDYQVPQTKIKQSEIYTALEALTHYNDTYKKAG
AVHGCAVCKDDKVLSFVEDVGRHNAVDTLAGEMWLNKESGEDKIFYTTGRLTSEMVIKVAQMGIPVLLSRSGVTQMGLDL
AQQFGITTIARAKGLRFQVFTGAEKIEFDVKGE

Sequences:

>Translated_273_residues
MVKPNIIKTSENPLQTIEVEVFDEYGEKLTKQIACERPLTVMLNWKEIVTLMTLGSRPESLVLGYLKNQSFLSDPEAVES
IIIDWETSSAAVITNEDTSQLEQALKKKTVTSGCGQGTMFGNVMKQLEDYQVPQTKIKQSEIYTALEALTHYNDTYKKAG
AVHGCAVCKDDKVLSFVEDVGRHNAVDTLAGEMWLNKESGEDKIFYTTGRLTSEMVIKVAQMGIPVLLSRSGVTQMGLDL
AQQFGITTIARAKGLRFQVFTGAEKIEFDVKGE
>Mature_273_residues
MVKPNIIKTSENPLQTIEVEVFDEYGEKLTKQIACERPLTVMLNWKEIVTLMTLGSRPESLVLGYLKNQSFLSDPEAVES
IIIDWETSSAAVITNEDTSQLEQALKKKTVTSGCGQGTMFGNVMKQLEDYQVPQTKIKQSEIYTALEALTHYNDTYKKAG
AVHGCAVCKDDKVLSFVEDVGRHNAVDTLAGEMWLNKESGEDKIFYTTGRLTSEMVIKVAQMGIPVLLSRSGVTQMGLDL
AQQFGITTIARAKGLRFQVFTGAEKIEFDVKGE

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=265, Percent_Identity=23.0188679245283, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 30274; Mature: 30274

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKPNIIKTSENPLQTIEVEVFDEYGEKLTKQIACERPLTVMLNWKEIVTLMTLGSRPES
CCCCCEEECCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHH
LVLGYLKNQSFLSDPEAVESIIIDWETSSAAVITNEDTSQLEQALKKKTVTSGCGQGTMF
HHHHHHCCCCCCCCHHHHHHEEEEECCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHH
GNVMKQLEDYQVPQTKIKQSEIYTALEALTHYNDTYKKAGAVHGCAVCKDDKVLSFVEDV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEECCCCHHHHHHHHH
GRHNAVDTLAGEMWLNKESGEDKIFYTTGRLTSEMVIKVAQMGIPVLLSRSGVTQMGLDL
HCCCHHHHHHHHHEECCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEECCCCHHHHHHH
AQQFGITTIARAKGLRFQVFTGAEKIEFDVKGE
HHHHCCHHHHHHCCCEEEEEECCEEEEEEECCC
>Mature Secondary Structure
MVKPNIIKTSENPLQTIEVEVFDEYGEKLTKQIACERPLTVMLNWKEIVTLMTLGSRPES
CCCCCEEECCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHH
LVLGYLKNQSFLSDPEAVESIIIDWETSSAAVITNEDTSQLEQALKKKTVTSGCGQGTMF
HHHHHHCCCCCCCCHHHHHHEEEEECCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHH
GNVMKQLEDYQVPQTKIKQSEIYTALEALTHYNDTYKKAGAVHGCAVCKDDKVLSFVEDV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEECCCCHHHHHHHHH
GRHNAVDTLAGEMWLNKESGEDKIFYTTGRLTSEMVIKVAQMGIPVLLSRSGVTQMGLDL
HCCCHHHHHHHHHEECCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEECCCCHHHHHHH
AQQFGITTIARAKGLRFQVFTGAEKIEFDVKGE
HHHHCCHHHHHHCCCEEEEEECCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]