| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709448
Identifier: 218709448
GI number: 218709448
Start: 1590636
End: 1591820
Strand: Reverse
Name: 218709448
Synonym: VS_1457
Alternate gene names: NA
Gene position: 1591820-1590636 (Counterclockwise)
Preceding gene: 218709449
Following gene: 218709447
Centisome position: 48.25
GC content: 43.88
Gene sequence:
>1185_bases ATGAAATTTCTATCAAAAGTCTCTTATTCCCTAGACGATAAAATCGCAGTAGATGAGCTGCTCAGTGGGGTGGCAAACCC TGACGATATTGCCTGTCTTATCTGCTACTGCACCGAAGAGTACTCCACACTTGCTGTGCAGAGATATTTGGTAGATGCGC TCCCGAATACACCAATACATGGCTGCACCACTTGTCACGGTATTATGACCGAAACAGGGTTCCATTCAGGCCCTGTGATT GGGATACTCATCATCTATGATTCCGGGATCAATGCCTACGGTACCGGCATCAGTCACTTTGGCGATTCCATAGACCGTAG TACATTCAGCGCCATCGATAAAGCATTAAAGAACGCCAACCGAGAAGGTGAAATACCCGATCTTATCTTGCTCCATTCCA CCCCAGGAAATGAAGAGAAGGTGATGGCGGCCATCGATAACAAATTTGGCACAGAGGTGCCGATTATTGGTGGAAGCGCA GCAGACAATCAAGTGTCTGGAAATTGGAGTATCTTTACCGAAGAAGCTCTTGCTATTAATGGCGTCTCTTTAACGGTGTT TTTTGCGTCACAATCCATCTATTCATCTTTTAGCGCCGGTCATACACCCACTCAGTATTCAGGCACCGTCACCAAAGTAA GAAATCGAATATTGTTAGAGATCGACCATAGGCCTGCGACCACCGTTTATAATGAATGGACTAATTTTCATTTAGGTGGC AGTGATGATGGGTATATTTTTGAAAAGTCGACAGTTTATCCATTAGGTCGAAAGGTCGGTTCTTCTTACGACTACCCATA TTTCAAGTTGTCGCATTCGATCAGAGAAACTGAGTGTAACGGTATCGAGTTGTTCACTGATATCAATGAAGGTGACACCA TCTATTTGATGCAAGGCTCTAAGCAACAACTTATCAGCCGTGCCGCTAACATCATTCATTCGTCTTACTATAATGATATG GATCTTGAAGAAAAATTAGGGGCGATCAACATATTCTGTGCAGGACCAATGCTGCACCTAAAACAAGATATGGATGAGGT TTGTGACCAAATCAATCACGCACTTGGTGGGCTTCCATACATATGTCCATTTACGTTTGGTGAGCAAGGCAGACTCTCTG GTGGTGAGAATGCGCACGGAAATTTGATGGTATCGTCTGCAACGTTTTATAGGCTGAAAAAGTAA
Upstream 100 bases:
>100_bases GTCTCACCTCAATTCTTTTGATAGAAATATGTACTAAGTCAGTGAAATAGATTGTATAAAAGTGTTATAAAGAGAGCATT AATAAAATCTTCCGAGATCT
Downstream 100 bases:
>100_bases TGGATACTGAAGACCAAGAAGCGCTGCAAGAAGCTCGTATTGAACTCCAAAAACTAAAGGTCCGTGAACGTAAATTAGCT GAAGAGAATAGGGTGATCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 394; Mature: 394
Protein sequence:
>394_residues MKFLSKVSYSLDDKIAVDELLSGVANPDDIACLICYCTEEYSTLAVQRYLVDALPNTPIHGCTTCHGIMTETGFHSGPVI GILIIYDSGINAYGTGISHFGDSIDRSTFSAIDKALKNANREGEIPDLILLHSTPGNEEKVMAAIDNKFGTEVPIIGGSA ADNQVSGNWSIFTEEALAINGVSLTVFFASQSIYSSFSAGHTPTQYSGTVTKVRNRILLEIDHRPATTVYNEWTNFHLGG SDDGYIFEKSTVYPLGRKVGSSYDYPYFKLSHSIRETECNGIELFTDINEGDTIYLMQGSKQQLISRAANIIHSSYYNDM DLEEKLGAINIFCAGPMLHLKQDMDEVCDQINHALGGLPYICPFTFGEQGRLSGGENAHGNLMVSSATFYRLKK
Sequences:
>Translated_394_residues MKFLSKVSYSLDDKIAVDELLSGVANPDDIACLICYCTEEYSTLAVQRYLVDALPNTPIHGCTTCHGIMTETGFHSGPVI GILIIYDSGINAYGTGISHFGDSIDRSTFSAIDKALKNANREGEIPDLILLHSTPGNEEKVMAAIDNKFGTEVPIIGGSA ADNQVSGNWSIFTEEALAINGVSLTVFFASQSIYSSFSAGHTPTQYSGTVTKVRNRILLEIDHRPATTVYNEWTNFHLGG SDDGYIFEKSTVYPLGRKVGSSYDYPYFKLSHSIRETECNGIELFTDINEGDTIYLMQGSKQQLISRAANIIHSSYYNDM DLEEKLGAINIFCAGPMLHLKQDMDEVCDQINHALGGLPYICPFTFGEQGRLSGGENAHGNLMVSSATFYRLKK >Mature_394_residues MKFLSKVSYSLDDKIAVDELLSGVANPDDIACLICYCTEEYSTLAVQRYLVDALPNTPIHGCTTCHGIMTETGFHSGPVI GILIIYDSGINAYGTGISHFGDSIDRSTFSAIDKALKNANREGEIPDLILLHSTPGNEEKVMAAIDNKFGTEVPIIGGSA ADNQVSGNWSIFTEEALAINGVSLTVFFASQSIYSSFSAGHTPTQYSGTVTKVRNRILLEIDHRPATTVYNEWTNFHLGG SDDGYIFEKSTVYPLGRKVGSSYDYPYFKLSHSIRETECNGIELFTDINEGDTIYLMQGSKQQLISRAANIIHSSYYNDM DLEEKLGAINIFCAGPMLHLKQDMDEVCDQINHALGGLPYICPFTFGEQGRLSGGENAHGNLMVSSATFYRLKK
Specific function: Unknown
COG id: COG3287
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43165; Mature: 43165
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFLSKVSYSLDDKIAVDELLSGVANPDDIACLICYCTEEYSTLAVQRYLVDALPNTPIH CCCHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCC GCTTCHGIMTETGFHSGPVIGILIIYDSGINAYGTGISHFGDSIDRSTFSAIDKALKNAN CCHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCC REGEIPDLILLHSTPGNEEKVMAAIDNKFGTEVPIIGGSAADNQVSGNWSIFTEEALAIN CCCCCCCEEEEECCCCCCHHEEEEECCCCCCCCCEECCCCCCCCCCCCEEEEECCEEEEC GVSLTVFFASQSIYSSFSAGHTPTQYSGTVTKVRNRILLEIDHRPATTVYNEWTNFHLGG CEEEEEEEECHHHHHHHCCCCCCCCCCCHHHHHCCEEEEEECCCCCCHHHHCCCEEECCC SDDGYIFEKSTVYPLGRKVGSSYDYPYFKLSHSIRETECNGIELFTDINEGDTIYLMQGS CCCCEEEECCCCCHHHHHHCCCCCCCCEEECCCHHHCCCCCEEEEEECCCCCEEEEEECC KQQLISRAANIIHSSYYNDMDLEEKLGAINIFCAGPMLHLKQDMDEVCDQINHALGGLPY HHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCE ICPFTFGEQGRLSGGENAHGNLMVSSATFYRLKK EEEECCCCCCCCCCCCCCCCCEEEECEEEEEECC >Mature Secondary Structure MKFLSKVSYSLDDKIAVDELLSGVANPDDIACLICYCTEEYSTLAVQRYLVDALPNTPIH CCCHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCC GCTTCHGIMTETGFHSGPVIGILIIYDSGINAYGTGISHFGDSIDRSTFSAIDKALKNAN CCHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCC REGEIPDLILLHSTPGNEEKVMAAIDNKFGTEVPIIGGSAADNQVSGNWSIFTEEALAIN CCCCCCCEEEEECCCCCCHHEEEEECCCCCCCCCEECCCCCCCCCCCCEEEEECCEEEEC GVSLTVFFASQSIYSSFSAGHTPTQYSGTVTKVRNRILLEIDHRPATTVYNEWTNFHLGG CEEEEEEEECHHHHHHHCCCCCCCCCCCHHHHHCCEEEEEECCCCCCHHHHCCCEEECCC SDDGYIFEKSTVYPLGRKVGSSYDYPYFKLSHSIRETECNGIELFTDINEGDTIYLMQGS CCCCEEEECCCCCHHHHHHCCCCCCCCEEECCCHHHCCCCCEEEEEECCCCCEEEEEECC KQQLISRAANIIHSSYYNDMDLEEKLGAINIFCAGPMLHLKQDMDEVCDQINHALGGLPY HHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCE ICPFTFGEQGRLSGGENAHGNLMVSSATFYRLKK EEEECCCCCCCCCCCCCCCCCEEEECEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA