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The map label for this gene is ycbZ [H]

Identifier: 218709421

GI number: 218709421

Start: 1572071

End: 1573723

Strand: Reverse

Name: ycbZ [H]

Synonym: VS_1430

Alternate gene names: 218709421

Gene position: 1573723-1572071 (Counterclockwise)

Preceding gene: 218709425

Following gene: 218709420

Centisome position: 47.7

GC content: 43.56

Gene sequence:

>1653_bases
ATGACTCTAGTAGATTGGCGACATGTTACGCCTCAGTACGACGAATATAGCGCTCAATTAGAGCAATTCCCTGACATCTC
GCCTTTCCCATTTTCAGACATTCAACATAGATTCAACGATGCGTTAACCCGCTTTGTCCGCTTGTCCAACCTTTCGCGTG
TTTTACTTGTCAACGCTCCGGACAATTCGATCTATCGTCAAATGATCGTTGAATCTTTAATAACTGCTCTAGATGATCAC
ACGTTACCAGTAATAAAAACTGAGTCTTTAAATGCTGTCTCTCTGTTTGACCAAGTTCAATCAAAAGACGGCCAAGTCGT
TGCGACAAAGCCTGGCTTACTGGCTAGAGCGAACAATGGTTATCTGATTGTTTCAGCCAACTTGATTCTAGCAAACCCGG
GAAGCTGGTTACTGCTTAAGTCTGCACTTCTTGGTGAGGCCGTAGAGCCCATCAGTAGCAACCCAGAACACTTAAACCAA
TCTCCATCTTTACCGCTTACCTACAATATTAAGTTGATTGTGGTTGGAGACCGAGCTCAACTCGGCGATCTTGATTATCT
AGACAGTGATATTCAAACTGGTTTCTGCCTATTCAGTGAAATTGAACAAGACATAAAGCTAACAGAAGAGACGTTGACTC
AATATCTTGGTTACCTTAAATGGCTCCAACAACGTTATGAACTGCCAAACATCACGCAACAGGCGGTGACAGGCATTCTT
ACTGCTGGTGCGAGAGAAACTGAAGACCAAAGCTATATACCGTTATGCCCGATTTGGCACAATGTGTTATTGAACGAAGC
TTTGATTGAAGCCGACCATGGTGAGATTGATGGTCACCATATTCAGCAAGCACAACAACACAAATACAACCGCGAATCGT
ACTTACCTGAACGTGCTCTTGATGATATTCGAGATGGCCAAGTTATTATCGAAACCGAGGGTGAACAAGTTGGACAAGTT
AATGGTCTGACGGTTATCGATGTACCAGGACACCCAGTATCGTATGGTGAACCTGCCCGAATTTCATGTGTTATCCACTT
TGGTGATGGTGATATTGCCGACGTTGAGCGCAAAGCGGAACTCGGTGGTAACCTTCACGCCAAAGGTATGATGATCATGC
AAGCGTTTGTAAGCAGCGCGTTAAACCTTGAAGATCCGTTGCCCTATGCTGCTTCTGTTGTGTTTGAGCAATCATACTGC
GAAGTTGATGGCGATAGTGCTTCTCTTGCTGAGCTTTGCTCTTTGGTCAGTGCTTTGTCGGAATACCCTATCAATCAACA
AATAGCGGTAACCGGTGCTGTCGACCAATTCGGTCGTGTACAAGCAGTTGGTGGGCTAAACGAGAAAATCGAAGGCTTCT
ATCATGTGTGTAAACACAACGGGTTAACTGGCGAACAAGGTGTGATCCTTCCAAGATCCAACTTAAGACACCTTGCTCTG
AAGCCAGACCTAATTGAAAGCATCAAAAACAAAGAATTCCATATTTGGTCTGTCTCTAATGTAGATGAAGCTATTCCTCT
TATTATGAACAAACCATTTAGAGACGATGAACAAGAAAGCGTTCTGAGCAAAATTGCGGAACGTATTGAAAACTTTGAAA
GACATGAGCACCCTATTGGAATTGTTGGACGCATTAAAAACTGGTTTGTCTAG

Upstream 100 bases:

>100_bases
ACTTATATTAGCTTAGTGATTAGTAACTACAACATAGAGCTACAAGCGAGATCGGTTTTTCTATATACTCCCTACCTCAT
TATCATAATCAGAAACTTAA

Downstream 100 bases:

>100_bases
TACTGATCGGACTTGTTTAGCGTACACCTGTTCACTAATATGCACCTATCAAAAATTGGAGTAATTGATAATGCAAAACA
AACGTGATTCTTACACTCGC

Product: putative protease La

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 550; Mature: 549

Protein sequence:

>550_residues
MTLVDWRHVTPQYDEYSAQLEQFPDISPFPFSDIQHRFNDALTRFVRLSNLSRVLLVNAPDNSIYRQMIVESLITALDDH
TLPVIKTESLNAVSLFDQVQSKDGQVVATKPGLLARANNGYLIVSANLILANPGSWLLLKSALLGEAVEPISSNPEHLNQ
SPSLPLTYNIKLIVVGDRAQLGDLDYLDSDIQTGFCLFSEIEQDIKLTEETLTQYLGYLKWLQQRYELPNITQQAVTGIL
TAGARETEDQSYIPLCPIWHNVLLNEALIEADHGEIDGHHIQQAQQHKYNRESYLPERALDDIRDGQVIIETEGEQVGQV
NGLTVIDVPGHPVSYGEPARISCVIHFGDGDIADVERKAELGGNLHAKGMMIMQAFVSSALNLEDPLPYAASVVFEQSYC
EVDGDSASLAELCSLVSALSEYPINQQIAVTGAVDQFGRVQAVGGLNEKIEGFYHVCKHNGLTGEQGVILPRSNLRHLAL
KPDLIESIKNKEFHIWSVSNVDEAIPLIMNKPFRDDEQESVLSKIAERIENFERHEHPIGIVGRIKNWFV

Sequences:

>Translated_550_residues
MTLVDWRHVTPQYDEYSAQLEQFPDISPFPFSDIQHRFNDALTRFVRLSNLSRVLLVNAPDNSIYRQMIVESLITALDDH
TLPVIKTESLNAVSLFDQVQSKDGQVVATKPGLLARANNGYLIVSANLILANPGSWLLLKSALLGEAVEPISSNPEHLNQ
SPSLPLTYNIKLIVVGDRAQLGDLDYLDSDIQTGFCLFSEIEQDIKLTEETLTQYLGYLKWLQQRYELPNITQQAVTGIL
TAGARETEDQSYIPLCPIWHNVLLNEALIEADHGEIDGHHIQQAQQHKYNRESYLPERALDDIRDGQVIIETEGEQVGQV
NGLTVIDVPGHPVSYGEPARISCVIHFGDGDIADVERKAELGGNLHAKGMMIMQAFVSSALNLEDPLPYAASVVFEQSYC
EVDGDSASLAELCSLVSALSEYPINQQIAVTGAVDQFGRVQAVGGLNEKIEGFYHVCKHNGLTGEQGVILPRSNLRHLAL
KPDLIESIKNKEFHIWSVSNVDEAIPLIMNKPFRDDEQESVLSKIAERIENFERHEHPIGIVGRIKNWFV
>Mature_549_residues
TLVDWRHVTPQYDEYSAQLEQFPDISPFPFSDIQHRFNDALTRFVRLSNLSRVLLVNAPDNSIYRQMIVESLITALDDHT
LPVIKTESLNAVSLFDQVQSKDGQVVATKPGLLARANNGYLIVSANLILANPGSWLLLKSALLGEAVEPISSNPEHLNQS
PSLPLTYNIKLIVVGDRAQLGDLDYLDSDIQTGFCLFSEIEQDIKLTEETLTQYLGYLKWLQQRYELPNITQQAVTGILT
AGARETEDQSYIPLCPIWHNVLLNEALIEADHGEIDGHHIQQAQQHKYNRESYLPERALDDIRDGQVIIETEGEQVGQVN
GLTVIDVPGHPVSYGEPARISCVIHFGDGDIADVERKAELGGNLHAKGMMIMQAFVSSALNLEDPLPYAASVVFEQSYCE
VDGDSASLAELCSLVSALSEYPINQQIAVTGAVDQFGRVQAVGGLNEKIEGFYHVCKHNGLTGEQGVILPRSNLRHLALK
PDLIESIKNKEFHIWSVSNVDEAIPLIMNKPFRDDEQESVLSKIAERIENFERHEHPIGIVGRIKNWFV

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=590, Percent_Identity=38.4745762711864, Blast_Score=401, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.-

Molecular weight: Translated: 61315; Mature: 61184

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLVDWRHVTPQYDEYSAQLEQFPDISPFPFSDIQHRFNDALTRFVRLSNLSRVLLVNAP
CCEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
DNSIYRQMIVESLITALDDHTLPVIKTESLNAVSLFDQVQSKDGQVVATKPGLLARANNG
CHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCEEEEECCCEEEECCCC
YLIVSANLILANPGSWLLLKSALLGEAVEPISSNPEHLNQSPSLPLTYNIKLIVVGDRAQ
EEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEEEEEEEEEECCCC
LGDLDYLDSDIQTGFCLFSEIEQDIKLTEETLTQYLGYLKWLQQRYELPNITQQAVTGIL
CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
TAGARETEDQSYIPLCPIWHNVLLNEALIEADHGEIDGHHIQQAQQHKYNRESYLPERAL
HCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHCCCHHHH
DDIRDGQVIIETEGEQVGQVNGLTVIDVPGHPVSYGEPARISCVIHFGDGDIADVERKAE
HHCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH
LGGNLHAKGMMIMQAFVSSALNLEDPLPYAASVVFEQSYCEVDGDSASLAELCSLVSALS
HCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
EYPINQQIAVTGAVDQFGRVQAVGGLNEKIEGFYHVCKHNGLTGEQGVILPRSNLRHLAL
HCCCCCEEEEEECHHHCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEE
KPDLIESIKNKEFHIWSVSNVDEAIPLIMNKPFRDDEQESVLSKIAERIENFERHEHPIG
CCHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
IVGRIKNWFV
EEEHHHHCCC
>Mature Secondary Structure 
TLVDWRHVTPQYDEYSAQLEQFPDISPFPFSDIQHRFNDALTRFVRLSNLSRVLLVNAP
CEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
DNSIYRQMIVESLITALDDHTLPVIKTESLNAVSLFDQVQSKDGQVVATKPGLLARANNG
CHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCEEEEECCCEEEECCCC
YLIVSANLILANPGSWLLLKSALLGEAVEPISSNPEHLNQSPSLPLTYNIKLIVVGDRAQ
EEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEEEEEEEEEECCCC
LGDLDYLDSDIQTGFCLFSEIEQDIKLTEETLTQYLGYLKWLQQRYELPNITQQAVTGIL
CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
TAGARETEDQSYIPLCPIWHNVLLNEALIEADHGEIDGHHIQQAQQHKYNRESYLPERAL
HCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHCCCHHHH
DDIRDGQVIIETEGEQVGQVNGLTVIDVPGHPVSYGEPARISCVIHFGDGDIADVERKAE
HHCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH
LGGNLHAKGMMIMQAFVSSALNLEDPLPYAASVVFEQSYCEVDGDSASLAELCSLVSALS
HCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
EYPINQQIAVTGAVDQFGRVQAVGGLNEKIEGFYHVCKHNGLTGEQGVILPRSNLRHLAL
HCCCCCEEEEEECHHHCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEE
KPDLIESIKNKEFHIWSVSNVDEAIPLIMNKPFRDDEQESVLSKIAERIENFERHEHPIG
CCHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
IVGRIKNWFV
EEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]