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The map label for this gene is yhdX [H]

Identifier: 218709393

GI number: 218709393

Start: 1532209

End: 1533414

Strand: Reverse

Name: yhdX [H]

Synonym: VS_1402

Alternate gene names: 218709393

Gene position: 1533414-1532209 (Counterclockwise)

Preceding gene: 218709394

Following gene: 218709392

Centisome position: 46.48

GC content: 42.37

Gene sequence:

>1206_bases
ATGAAACCTAATGAAACTATTTCTCCAACTCAAGAAAAACCACAGCCCAAAAGTGCCAACTTATTTTACAACCCCACTTT
TCGCTCAATTGTTTTCCAAATTCTCGCCGTCGCGGCGCTTTGTGCTTTCTTTTACACGATTGTAAATAATGCACTCACAA
ACTTAGACTCCCGTGGTATCGCCACTGGTTTTGATTTTCTCTCCCAAGAAGCTGGTTTTGGTATCGGCTTAACACTGATT
GAATACGACGAAACATTCTCATACGGTCGTACATTCTTTATCGGTCTTCTCAATACCGCTTTAGTTTCAGTATTAGGTAT
CATGTTAGCCACAGTACTGGGCTTTAGTATGGGTATCGCTAGGCTATCTTCAAACTGGCTAGTTAGCCGATTTGCAGCTG
TCTATATTGAGATATTCCGAAATATTCCTCTTCTTCTACAAATATTTTTTTGGTATTTCGCCGTTCTACAAGCATTGCCT
TCCGCTCGTCAGAGTATGAGCCTTGGTGAAGCTATTTTCTTGAATGTACGTGGTTTGTACTTCCCAGCTCCAGTGTTAGA
ACAAGGCAGTAGCATTGTCATCGCATCATTGATTGTCGGTATCATCGCTACTTTTGTTATCAACATCTGGGCTAATAACA
AACAAAAGCTAACCGGCCAACAAACACCAATGTTGCGAATTGCTGCAGCGCTGATTGTGGGCTTACCATTAGTCACTTAC
TTTGTTATGGGTATGCCTATCTCTGCGGAGTACCCTGTTCTGAAAGGGTTTAACTTCAAAGGTGGTATCAGCATCATTCC
TGAATTGGCAGCATTGATGCTCGCTTTAAGTATCTACACAGCAGCATTCATCGCCGAGATTGTGCGTTCAGGTATTAATG
CGGTAAACCATGGGCAAACAGAGGCTGCTATGTCTCTAGGGCTCCCGCGAACAAGAACTCTTAAGCTAGTCATTATTCCG
CAAGCATTAAGAATTATTATCCCACCACTAACCAGTCAGTATTTAAACCTGACCAAAAACTCATCACTTGCGATGGCCAT
TGGTTATCCCGATCTTGTCTCTGTCTTTGCAGGAACAACATTGAACCAAACTGGACAAGCTATCGAAGTAATCGCGATGA
CAATGGGCGTCTACCTAACTCTAAGCCTATTAACATCTGCTCTAATGAACATTTACAACCGCAAAGTAGCGTTGGTGGAG
AGATAA

Upstream 100 bases:

>100_bases
GCTTTATGTACGCTCCACCAATCCGTTAATAAATTTACAAGCATCAATTAGGGCGGACTTTTCCGCCCTATTTATTAAAT
GGATTTGAGGTTATAGCAGT

Downstream 100 bases:

>100_bases
GATGAGTACACATCAATTTCAACCTGATCTTCCGCCTCCAGCGAATACTGTTGGACCTGTCGGTTGGTTAAGAAAAAATC
TATTTAATGGACCAATTAAC

Product: amino-acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MKPNETISPTQEKPQPKSANLFYNPTFRSIVFQILAVAALCAFFYTIVNNALTNLDSRGIATGFDFLSQEAGFGIGLTLI
EYDETFSYGRTFFIGLLNTALVSVLGIMLATVLGFSMGIARLSSNWLVSRFAAVYIEIFRNIPLLLQIFFWYFAVLQALP
SARQSMSLGEAIFLNVRGLYFPAPVLEQGSSIVIASLIVGIIATFVINIWANNKQKLTGQQTPMLRIAAALIVGLPLVTY
FVMGMPISAEYPVLKGFNFKGGISIIPELAALMLALSIYTAAFIAEIVRSGINAVNHGQTEAAMSLGLPRTRTLKLVIIP
QALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEVIAMTMGVYLTLSLLTSALMNIYNRKVALVE
R

Sequences:

>Translated_401_residues
MKPNETISPTQEKPQPKSANLFYNPTFRSIVFQILAVAALCAFFYTIVNNALTNLDSRGIATGFDFLSQEAGFGIGLTLI
EYDETFSYGRTFFIGLLNTALVSVLGIMLATVLGFSMGIARLSSNWLVSRFAAVYIEIFRNIPLLLQIFFWYFAVLQALP
SARQSMSLGEAIFLNVRGLYFPAPVLEQGSSIVIASLIVGIIATFVINIWANNKQKLTGQQTPMLRIAAALIVGLPLVTY
FVMGMPISAEYPVLKGFNFKGGISIIPELAALMLALSIYTAAFIAEIVRSGINAVNHGQTEAAMSLGLPRTRTLKLVIIP
QALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEVIAMTMGVYLTLSLLTSALMNIYNRKVALVE
R
>Mature_401_residues
MKPNETISPTQEKPQPKSANLFYNPTFRSIVFQILAVAALCAFFYTIVNNALTNLDSRGIATGFDFLSQEAGFGIGLTLI
EYDETFSYGRTFFIGLLNTALVSVLGIMLATVLGFSMGIARLSSNWLVSRFAAVYIEIFRNIPLLLQIFFWYFAVLQALP
SARQSMSLGEAIFLNVRGLYFPAPVLEQGSSIVIASLIVGIIATFVINIWANNKQKLTGQQTPMLRIAAALIVGLPLVTY
FVMGMPISAEYPVLKGFNFKGGISIIPELAALMLALSIYTAAFIAEIVRSGINAVNHGQTEAAMSLGLPRTRTLKLVIIP
QALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTTLNQTGQAIEVIAMTMGVYLTLSLLTSALMNIYNRKVALVE
R

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=392, Percent_Identity=56.8877551020408, Blast_Score=422, Evalue=1e-119,
Organism=Escherichia coli, GI1786874, Length=126, Percent_Identity=35.7142857142857, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1786873, Length=130, Percent_Identity=33.8461538461538, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788226, Length=143, Percent_Identity=34.2657342657343, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87082239, Length=146, Percent_Identity=33.5616438356164, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787030, Length=138, Percent_Identity=30.4347826086957, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 43678; Mature: 43678

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPNETISPTQEKPQPKSANLFYNPTFRSIVFQILAVAALCAFFYTIVNNALTNLDSRGI
CCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ATGFDFLSQEAGFGIGLTLIEYDETFSYGRTFFIGLLNTALVSVLGIMLATVLGFSMGIA
HHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLSSNWLVSRFAAVYIEIFRNIPLLLQIFFWYFAVLQALPSARQSMSLGEAIFLNVRGLY
HHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
FPAPVLEQGSSIVIASLIVGIIATFVINIWANNKQKLTGQQTPMLRIAAALIVGLPLVTY
CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHH
FVMGMPISAEYPVLKGFNFKGGISIIPELAALMLALSIYTAAFIAEIVRSGINAVNHGQT
HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCH
EAAMSLGLPRTRTLKLVIIPQALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTT
HHHHHHCCCCCCEEEEEEECHHHHHHCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHCCC
LNQTGQAIEVIAMTMGVYLTLSLLTSALMNIYNRKVALVER
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MKPNETISPTQEKPQPKSANLFYNPTFRSIVFQILAVAALCAFFYTIVNNALTNLDSRGI
CCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ATGFDFLSQEAGFGIGLTLIEYDETFSYGRTFFIGLLNTALVSVLGIMLATVLGFSMGIA
HHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLSSNWLVSRFAAVYIEIFRNIPLLLQIFFWYFAVLQALPSARQSMSLGEAIFLNVRGLY
HHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
FPAPVLEQGSSIVIASLIVGIIATFVINIWANNKQKLTGQQTPMLRIAAALIVGLPLVTY
CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHH
FVMGMPISAEYPVLKGFNFKGGISIIPELAALMLALSIYTAAFIAEIVRSGINAVNHGQT
HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCH
EAAMSLGLPRTRTLKLVIIPQALRIIIPPLTSQYLNLTKNSSLAMAIGYPDLVSVFAGTT
HHHHHHCCCCCCEEEEEEECHHHHHHCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHCCC
LNQTGQAIEVIAMTMGVYLTLSLLTSALMNIYNRKVALVER
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]