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The map label for this gene is yhdY [H]

Identifier: 218709392

GI number: 218709392

Start: 1531110

End: 1532207

Strand: Reverse

Name: yhdY [H]

Synonym: VS_1401

Alternate gene names: 218709392

Gene position: 1532207-1531110 (Counterclockwise)

Preceding gene: 218709393

Following gene: 218709391

Centisome position: 46.44

GC content: 44.63

Gene sequence:

>1098_bases
ATGAGTACACATCAATTTCAACCTGATCTTCCGCCTCCAGCGAATACTGTTGGACCTGTCGGTTGGTTAAGAAAAAATCT
ATTTAATGGACCAATTAACAGTGTCGTCACTGTGGTGCTTGCTTACTTTGCTTTCACTTTATTATGGGCAATAGCTGATT
GGGCATTCTTGAGCGCTGATTGGATAGGAACAACACGCGATGCCTGTACTAGCGAAGGCGCTTGTTGGGTTTTCATTAGC
GTCCGTTGGGACCAATTCATGTACGGCTTCTACCCAGAAGCGGAACTGTGGCGTCCTCGCTTTTTCTACGCAACATTAGC
TATTTTTGTTGCTTTGTTAGCTTACGAAAAAACACCTAAGCGTACGTGGATTTGGTTATTTTTTGTAAACATCTACCCGT
TTATCATTGCAGGCTTACTATACGGTGGTGTATTTGGTCTAGAGGTTGTTGATACCCATAAATGGGGCGGCCTACTGGTT
ACACTGATCATCGCACTTGTTGGTATCGTTGTATCACTACCTATCGGTGTCGCACTGGCGCTAGGGCGTCGTTCAGAGAT
GCCAATCATCCGCAGTATGTGTACCGTTTACATCGAAATCTGGCGTGGTGTTCCGTTAATTACGGTTCTATTCATGGCCT
CGGTAATGCTTCCGCTCTTTTTATCAGAGGGGATGGAGACCGATAAACTGATACGTGCGCTTGTCGGGGTAGTACTGTTT
AGTGCTGCTTATATGGCGGAAGTAATCCGTGGTGGTTTGCAAGCAATACCAAAAGGTCAATACGAAGCCGCTGACGCTCT
AGGGCTGAGCTATTGGAAAAAAACGGGGCTTATCATTCTGCCTCAAGCTCTTAAAATCACGATTCCTTCAATTGTGAATA
CCTTTATTGGTTTGTTCAAAGATACCAGTCTAGTTTTGATTATCGGTATGTTTGATGTACTAGGGATTGGCCAAGCCGCG
AATACCGACCCTGAGTGGCTTGGGTATTCAACAGAAAGTTATGTATTTGTCGCGTTAGTGTTCTGGGTGTTTTGTTTTGG
CATGTCGAGATACTCGATTTGGCTAGAAAACAGACTTCACACCGGTCACAAACGATAA

Upstream 100 bases:

>100_bases
GTAATCGCGATGACAATGGGCGTCTACCTAACTCTAAGCCTATTAACATCTGCTCTAATGAACATTTACAACCGCAAAGT
AGCGTTGGTGGAGAGATAAG

Downstream 100 bases:

>100_bases
TTAACAAGATCAAGGACGTATTATGACGCAGCAAACAGAAAACAACTCTCAAGGTCTTATGATCGAGTTAAAAGACATGA
ACAAGTGGTACGGCGAATTC

Product: ABC transporter transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MSTHQFQPDLPPPANTVGPVGWLRKNLFNGPINSVVTVVLAYFAFTLLWAIADWAFLSADWIGTTRDACTSEGACWVFIS
VRWDQFMYGFYPEAELWRPRFFYATLAIFVALLAYEKTPKRTWIWLFFVNIYPFIIAGLLYGGVFGLEVVDTHKWGGLLV
TLIIALVGIVVSLPIGVALALGRRSEMPIIRSMCTVYIEIWRGVPLITVLFMASVMLPLFLSEGMETDKLIRALVGVVLF
SAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKTGLIILPQALKITIPSIVNTFIGLFKDTSLVLIIGMFDVLGIGQAA
NTDPEWLGYSTESYVFVALVFWVFCFGMSRYSIWLENRLHTGHKR

Sequences:

>Translated_365_residues
MSTHQFQPDLPPPANTVGPVGWLRKNLFNGPINSVVTVVLAYFAFTLLWAIADWAFLSADWIGTTRDACTSEGACWVFIS
VRWDQFMYGFYPEAELWRPRFFYATLAIFVALLAYEKTPKRTWIWLFFVNIYPFIIAGLLYGGVFGLEVVDTHKWGGLLV
TLIIALVGIVVSLPIGVALALGRRSEMPIIRSMCTVYIEIWRGVPLITVLFMASVMLPLFLSEGMETDKLIRALVGVVLF
SAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKTGLIILPQALKITIPSIVNTFIGLFKDTSLVLIIGMFDVLGIGQAA
NTDPEWLGYSTESYVFVALVFWVFCFGMSRYSIWLENRLHTGHKR
>Mature_364_residues
STHQFQPDLPPPANTVGPVGWLRKNLFNGPINSVVTVVLAYFAFTLLWAIADWAFLSADWIGTTRDACTSEGACWVFISV
RWDQFMYGFYPEAELWRPRFFYATLAIFVALLAYEKTPKRTWIWLFFVNIYPFIIAGLLYGGVFGLEVVDTHKWGGLLVT
LIIALVGIVVSLPIGVALALGRRSEMPIIRSMCTVYIEIWRGVPLITVLFMASVMLPLFLSEGMETDKLIRALVGVVLFS
AAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKTGLIILPQALKITIPSIVNTFIGLFKDTSLVLIIGMFDVLGIGQAAN
TDPEWLGYSTESYVFVALVFWVFCFGMSRYSIWLENRLHTGHKR

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=357, Percent_Identity=55.7422969187675, Blast_Score=400, Evalue=1e-113,
Organism=Escherichia coli, GI1786873, Length=207, Percent_Identity=34.2995169082126, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788226, Length=205, Percent_Identity=35.609756097561, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787030, Length=162, Percent_Identity=34.5679012345679, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786874, Length=197, Percent_Identity=25.8883248730964, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788645, Length=178, Percent_Identity=29.7752808988764, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788646, Length=221, Percent_Identity=28.5067873303167, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI48994930, Length=111, Percent_Identity=32.4324324324324, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787086, Length=169, Percent_Identity=29.585798816568, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40898; Mature: 40767

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTHQFQPDLPPPANTVGPVGWLRKNLFNGPINSVVTVVLAYFAFTLLWAIADWAFLSAD
CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
WIGTTRDACTSEGACWVFISVRWDQFMYGFYPEAELWRPRFFYATLAIFVALLAYEKTPK
CCCCCHHHHCCCCCEEEEEEEEHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCC
RTWIWLFFVNIYPFIIAGLLYGGVFGLEVVDTHKWGGLLVTLIIALVGIVVSLPIGVALA
CEEEEHHHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LGRRSEMPIIRSMCTVYIEIWRGVPLITVLFMASVMLPLFLSEGMETDKLIRALVGVVLF
HCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKTGLIILPQALKITIPSIVNTFIGLFK
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECHHHHEEHHHHHHHHHHHHC
DTSLVLIIGMFDVLGIGQAANTDPEWLGYSTESYVFVALVFWVFCFGMSRYSIWLENRLH
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHC
TGHKR
CCCCC
>Mature Secondary Structure 
STHQFQPDLPPPANTVGPVGWLRKNLFNGPINSVVTVVLAYFAFTLLWAIADWAFLSAD
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
WIGTTRDACTSEGACWVFISVRWDQFMYGFYPEAELWRPRFFYATLAIFVALLAYEKTPK
CCCCCHHHHCCCCCEEEEEEEEHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCC
RTWIWLFFVNIYPFIIAGLLYGGVFGLEVVDTHKWGGLLVTLIIALVGIVVSLPIGVALA
CEEEEHHHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LGRRSEMPIIRSMCTVYIEIWRGVPLITVLFMASVMLPLFLSEGMETDKLIRALVGVVLF
HCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKTGLIILPQALKITIPSIVNTFIGLFK
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECHHHHEEHHHHHHHHHHHHC
DTSLVLIIGMFDVLGIGQAANTDPEWLGYSTESYVFVALVFWVFCFGMSRYSIWLENRLH
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHC
TGHKR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]