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The map label for this gene is dcrA [H]

Identifier: 218709387

GI number: 218709387

Start: 1527017

End: 1528420

Strand: Reverse

Name: dcrA [H]

Synonym: VS_1396

Alternate gene names: 218709387

Gene position: 1528420-1527017 (Counterclockwise)

Preceding gene: 218709389

Following gene: 218709386

Centisome position: 46.33

GC content: 44.3

Gene sequence:

>1404_bases
ATGAAAGAAATCCCGTTTCGTTGGATTGACAAATATCTCATTCACCTAAAAATCCAAGAAAAGTTCTATCTACTATTCTT
ATTACCTCTTATCGCCCTGGTTATACTGACTTTAGTTTTAGATAGCGCCGCGGACTCTTTACTTGCTCACCTTTATCAGG
ATGAATTGCTCCTGATGAAAGGGCTGATTGAAGCTGGACAACTCACCAAAGATCAGGTCGCTCAACTCGTTAGCAATTCT
GACACCATCTCTTTAGGATATGGCGCAGGATCTGTTTCTGTCATGAATGGCGCCTTCAGTTTAGTCGCAAGCCATGACCA
AAACTTATGGTCAGCTCTGTCTACTACTCAGGTATCGATTATTGCAGTAACTCTCACGCTGATAGCTCTGGGGGTTTACT
ACATCATGACTTTCATTGGTGGTGCTATGTTCTCGATGAACAAAGCACTCAGCACACTTGCGAGTGGCGATTTAACTTGT
CGCATGAACTACTTTTTAGTTCGCGATGAGTTCAGTGAAATTGCTATTACTATCGATAAGGTAGCCGAGCGTGAACAAAA
CATGGTTCTCTCAATCCAAGAGTCCGTTGCTCTCATGCAGCAAATCAGCTCGGATTTGAACCAATCAACGCAACAAAGCT
CAGATATCTCAAGTAATCAACAAGAGCACTTGAATAGCCTCGCCAGCGCAACTGAACAAATGGCAGCAACGATTCGCGAA
GTCGCTACCCTTGCCCATGATTCAAGCACTCAAACAATGGACGCTCGTGGTGTCGCACAAAGTGGTCAAGTTAAGGTTTC
TAATACTTTGGAATCGATCTCTAGCTTATCCCAAGAGATTCAATCGGCTTCGCAAGCAGTAGAAGAACTCGATGCTAATG
CAGCGCAGATCGATGAAGTAGTCGCAACCATCAATGGTATCTCTGAACAAACTAACCTGTTAGCGCTAAACGCTGCGATT
GAAGCTGCTCGAGCTGGAGAGCAAGGCCGTGGTTTTGCAGTTGTTGCTGATGAAGTTCGCGCTCTTGCCGGACGAACTCA
ACAAGCGACAGTTGAAATCCAGAGCATGATCGAGTCGTTACAGCGTAACAGTCAATCATTAACAGAACTGATGGAAGTGA
CAGTAAACAATGCTAATGAAGGCCAAACACTGATGTCGGAAGTGAACGTTGAGATCGGTTCTTTAGCTGAGAAAAACCAG
TCTATTTCTGATAGTAGTACGCAAATTGCTACTGCTGCAGAAGAGCAAGGTGTCGTTGCGGATAACATTGCACAAAGTGT
TGAAGAGATTCGTCATCAATCAGACGGCATCTGCGAGATGATCAGTAAGAGTAACTCTAACGTTGACCAACTTCGTAAGC
AGAGCGATACGATGGAAGGTTTGCTGACAGGTCTTAAAGCTTAA

Upstream 100 bases:

>100_bases
CAGAGTATCCATAACGTTGCCTCATAAATTATATGGATGATATAGTTGCGATTCTATTCATTCACCATTTATTGGTGGGC
TTACTTCGAGTATTACAATT

Downstream 100 bases:

>100_bases
TACTGACATCTAACCACCATCTAATGATGGTTCAATACAAGGGCTGCTTTTGCAGCCCTTTCTTATTTGCTTTTCCCTTG
CACTTCCCCGACAATACCCC

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MKEIPFRWIDKYLIHLKIQEKFYLLFLLPLIALVILTLVLDSAADSLLAHLYQDELLLMKGLIEAGQLTKDQVAQLVSNS
DTISLGYGAGSVSVMNGAFSLVASHDQNLWSALSTTQVSIIAVTLTLIALGVYYIMTFIGGAMFSMNKALSTLASGDLTC
RMNYFLVRDEFSEIAITIDKVAEREQNMVLSIQESVALMQQISSDLNQSTQQSSDISSNQQEHLNSLASATEQMAATIRE
VATLAHDSSTQTMDARGVAQSGQVKVSNTLESISSLSQEIQSASQAVEELDANAAQIDEVVATINGISEQTNLLALNAAI
EAARAGEQGRGFAVVADEVRALAGRTQQATVEIQSMIESLQRNSQSLTELMEVTVNNANEGQTLMSEVNVEIGSLAEKNQ
SISDSSTQIATAAEEQGVVADNIAQSVEEIRHQSDGICEMISKSNSNVDQLRKQSDTMEGLLTGLKA

Sequences:

>Translated_467_residues
MKEIPFRWIDKYLIHLKIQEKFYLLFLLPLIALVILTLVLDSAADSLLAHLYQDELLLMKGLIEAGQLTKDQVAQLVSNS
DTISLGYGAGSVSVMNGAFSLVASHDQNLWSALSTTQVSIIAVTLTLIALGVYYIMTFIGGAMFSMNKALSTLASGDLTC
RMNYFLVRDEFSEIAITIDKVAEREQNMVLSIQESVALMQQISSDLNQSTQQSSDISSNQQEHLNSLASATEQMAATIRE
VATLAHDSSTQTMDARGVAQSGQVKVSNTLESISSLSQEIQSASQAVEELDANAAQIDEVVATINGISEQTNLLALNAAI
EAARAGEQGRGFAVVADEVRALAGRTQQATVEIQSMIESLQRNSQSLTELMEVTVNNANEGQTLMSEVNVEIGSLAEKNQ
SISDSSTQIATAAEEQGVVADNIAQSVEEIRHQSDGICEMISKSNSNVDQLRKQSDTMEGLLTGLKA
>Mature_467_residues
MKEIPFRWIDKYLIHLKIQEKFYLLFLLPLIALVILTLVLDSAADSLLAHLYQDELLLMKGLIEAGQLTKDQVAQLVSNS
DTISLGYGAGSVSVMNGAFSLVASHDQNLWSALSTTQVSIIAVTLTLIALGVYYIMTFIGGAMFSMNKALSTLASGDLTC
RMNYFLVRDEFSEIAITIDKVAEREQNMVLSIQESVALMQQISSDLNQSTQQSSDISSNQQEHLNSLASATEQMAATIRE
VATLAHDSSTQTMDARGVAQSGQVKVSNTLESISSLSQEIQSASQAVEELDANAAQIDEVVATINGISEQTNLLALNAAI
EAARAGEQGRGFAVVADEVRALAGRTQQATVEIQSMIESLQRNSQSLTELMEVTVNNANEGQTLMSEVNVEIGSLAEKNQ
SISDSSTQIATAAEEQGVVADNIAQSVEEIRHQSDGICEMISKSNSNVDQLRKQSDTMEGLLTGLKA

Specific function: Mediates Taxis Toward Dipeptides VIa An Interaction With The Periplasmic Dipeptide-Binding Protein. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Transduce A Signal From The Outsid

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788194, Length=352, Percent_Identity=29.8295454545455, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI2367378, Length=335, Percent_Identity=29.5522388059701, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787690, Length=246, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788195, Length=221, Percent_Identity=36.1990950226244, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1789453, Length=171, Percent_Identity=32.7485380116959, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 50350; Mature: 50350

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEIPFRWIDKYLIHLKIQEKFYLLFLLPLIALVILTLVLDSAADSLLAHLYQDELLLMK
CCCCCHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIEAGQLTKDQVAQLVSNSDTISLGYGAGSVSVMNGAFSLVASHDQNLWSALSTTQVSI
HHHHHCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IAVTLTLIALGVYYIMTFIGGAMFSMNKALSTLASGDLTCRMNYFLVRDEFSEIAITIDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCHHHHHHHHHH
VAEREQNMVLSIQESVALMQQISSDLNQSTQQSSDISSNQQEHLNSLASATEQMAATIRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
VATLAHDSSTQTMDARGVAQSGQVKVSNTLESISSLSQEIQSASQAVEELDANAAQIDEV
HHHHHCCCCCCCHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
VATINGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAGRTQQATVEIQSMIESL
HHHHHCCCHHHHEEEHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHH
QRNSQSLTELMEVTVNNANEGQTLMSEVNVEIGSLAEKNQSISDSSTQIATAAEEQGVVA
HHCHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCHH
DNIAQSVEEIRHQSDGICEMISKSNSNVDQLRKQSDTMEGLLTGLKA
HHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKEIPFRWIDKYLIHLKIQEKFYLLFLLPLIALVILTLVLDSAADSLLAHLYQDELLLMK
CCCCCHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIEAGQLTKDQVAQLVSNSDTISLGYGAGSVSVMNGAFSLVASHDQNLWSALSTTQVSI
HHHHHCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IAVTLTLIALGVYYIMTFIGGAMFSMNKALSTLASGDLTCRMNYFLVRDEFSEIAITIDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCHHHHHHHHHH
VAEREQNMVLSIQESVALMQQISSDLNQSTQQSSDISSNQQEHLNSLASATEQMAATIRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
VATLAHDSSTQTMDARGVAQSGQVKVSNTLESISSLSQEIQSASQAVEELDANAAQIDEV
HHHHHCCCCCCCHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
VATINGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAGRTQQATVEIQSMIESL
HHHHHCCCHHHHEEEHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHH
QRNSQSLTELMEVTVNNANEGQTLMSEVNVEIGSLAEKNQSISDSSTQIATAAEEQGVVA
HHCHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCHH
DNIAQSVEEIRHQSDGICEMISKSNSNVDQLRKQSDTMEGLLTGLKA
HHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]