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The map label for this gene is ydiF [H]

Identifier: 218709228

GI number: 218709228

Start: 1309654

End: 1311228

Strand: Reverse

Name: ydiF [H]

Synonym: VS_1235

Alternate gene names: 218709228

Gene position: 1311228-1309654 (Counterclockwise)

Preceding gene: 218709229

Following gene: 218709227

Centisome position: 39.74

GC content: 45.21

Gene sequence:

>1575_bases
ATGCCTACTATATTAGCCAACAATCTCTCATTCCAACTCGATACTGGTGAGTGGTTATTCAAAGACATCACCTTTAATCT
GAACACGCGCCTTACAGGTCTAGTTGGAAGAAATGGAGCTGGGAAGTCACTACTGCTTTCGTTACTGGTCGGGCAAACAC
AACCCACATCAGGCAGTGTTTCCAGACAAGGCTCGATCGGCTTTTACTCCCAGTTACCTTCAAAGCTATTGGATAGCACA
ACCAGCATTGCTGACTTCTTGGGGATCACCGAAAAGTTAGACGCATTACATGCCATAGAACAAGGCAGCTGCGAACTTCA
GCACTTCAATATCGTTGGCGAGGATTGGGATTTACAAGCGAACACAAAGCAACTTTTAGCCACATTGAAAATAACCAGTG
GATTAACCACACCGTGCCATACATTGAGCGGCGGGCAGCTATCCCTATTGCAGCTTCATCGCTTATTCGTATCACACTAC
GACGTACTGATTCTCGACGAACCGACAAACCATTTGGATAGCGACGGGCGTAATTGGTTACTAGAACAGTACCAGTTGTT
TGCAGGAAAAGTGCTTGTCGTCAGTCACGATCGAAGCTTATTGAGACACATGGAAGGGATCTATCATCTCAACAGTTTGG
GATTACGTTTCTACAAAGGAAACTACGATGATTACTTCACGCAAATGTCGAGTCAAAGTGAAGCACTGGACAAGCAGATA
ACGCATCATCAATCGGAAAAGAAACGACTCGAGCGCCAAGCTCAGATTAACAAGGAAAAAGCTCAACAACGTGAGGCTCA
AGGTAACCGACTCCGAAAATCAGGTAGCCAACCCAAGATATTATTGGATGCCATGAAAGATAAAGCAGGGCGAACCCAAG
GCGCATCGGCAACAAGCCACAAGAACTTAAAGGATCAAAACCAACATAAGCTTCAATCTCTTAAAGAACAGCAAGAGCAA
CTGAAGCCGCAAGCGTTGTACCTACAACAAGCGAATCGTTCTAAAAAACACTCACTATTAACCGTTGAAGAGTGTCGCAT
GAGTTTTGGTTCTGGTGCTCCTATTAGCTTCTCTCTATCACAAGGGGAACGATGTTATCTAACTGGGGCTAATGGGTGCG
GAAAATCGACTCTGTTAAAAGCCATTCATGGCCAGCACTCGAACTATATCGGATCCATTAAGCGCTTAGGGGCGACCGTA
TACTTGGATCAACATTTTGGCCTGTTAGACACCAACGACACCATATTCGATAGTTTGATGACACACAGCTTTGGGTTAAC
AGAAAGTGACGCTCGAACCTTGCTCGCTGGAATTGGGTTCAGGCGAGACTCCGTATACCGAAAAGTGTCTCATTTAAGTG
GTGGTGAAAAAATGAAACTGGCGATGTTGATCGTTAGCCACAAACAAGACACCCCGCTTCTATTGCTCGATGAACCGGAC
AACCATCTAGACATCGACTCAAAGCAAGTATTGGCGTCCGCTTTACGTGAATACCAAGGCGCATTTATCTTGGTGAGTCA
TGATGCTGATTTTGTTAAGGAGGTCGGCGTCAGCCAAAACCATATACGACTTTAA

Upstream 100 bases:

>100_bases
GTAACGTCTTGGCGATCTATTCTTAGACTCCCATGTTGGTGTCTATGTAGAAAAGCGCCTCACCCCTTTTACTCGTTTAC
ACGTAAAGGGAGGTATTTTT

Downstream 100 bases:

>100_bases
CCTTCGTAAATTCGTTCACTTAGTGTAGTTAAGCGAGCATCGCTCCGGTGCTCGCCTTTCTCGATTGAGACAAGTAAACT
ACACGCCTCGAACATCTATT

Product: putative antibiotic resistance ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 524; Mature: 523

Protein sequence:

>524_residues
MPTILANNLSFQLDTGEWLFKDITFNLNTRLTGLVGRNGAGKSLLLSLLVGQTQPTSGSVSRQGSIGFYSQLPSKLLDST
TSIADFLGITEKLDALHAIEQGSCELQHFNIVGEDWDLQANTKQLLATLKITSGLTTPCHTLSGGQLSLLQLHRLFVSHY
DVLILDEPTNHLDSDGRNWLLEQYQLFAGKVLVVSHDRSLLRHMEGIYHLNSLGLRFYKGNYDDYFTQMSSQSEALDKQI
THHQSEKKRLERQAQINKEKAQQREAQGNRLRKSGSQPKILLDAMKDKAGRTQGASATSHKNLKDQNQHKLQSLKEQQEQ
LKPQALYLQQANRSKKHSLLTVEECRMSFGSGAPISFSLSQGERCYLTGANGCGKSTLLKAIHGQHSNYIGSIKRLGATV
YLDQHFGLLDTNDTIFDSLMTHSFGLTESDARTLLAGIGFRRDSVYRKVSHLSGGEKMKLAMLIVSHKQDTPLLLLDEPD
NHLDIDSKQVLASALREYQGAFILVSHDADFVKEVGVSQNHIRL

Sequences:

>Translated_524_residues
MPTILANNLSFQLDTGEWLFKDITFNLNTRLTGLVGRNGAGKSLLLSLLVGQTQPTSGSVSRQGSIGFYSQLPSKLLDST
TSIADFLGITEKLDALHAIEQGSCELQHFNIVGEDWDLQANTKQLLATLKITSGLTTPCHTLSGGQLSLLQLHRLFVSHY
DVLILDEPTNHLDSDGRNWLLEQYQLFAGKVLVVSHDRSLLRHMEGIYHLNSLGLRFYKGNYDDYFTQMSSQSEALDKQI
THHQSEKKRLERQAQINKEKAQQREAQGNRLRKSGSQPKILLDAMKDKAGRTQGASATSHKNLKDQNQHKLQSLKEQQEQ
LKPQALYLQQANRSKKHSLLTVEECRMSFGSGAPISFSLSQGERCYLTGANGCGKSTLLKAIHGQHSNYIGSIKRLGATV
YLDQHFGLLDTNDTIFDSLMTHSFGLTESDARTLLAGIGFRRDSVYRKVSHLSGGEKMKLAMLIVSHKQDTPLLLLDEPD
NHLDIDSKQVLASALREYQGAFILVSHDADFVKEVGVSQNHIRL
>Mature_523_residues
PTILANNLSFQLDTGEWLFKDITFNLNTRLTGLVGRNGAGKSLLLSLLVGQTQPTSGSVSRQGSIGFYSQLPSKLLDSTT
SIADFLGITEKLDALHAIEQGSCELQHFNIVGEDWDLQANTKQLLATLKITSGLTTPCHTLSGGQLSLLQLHRLFVSHYD
VLILDEPTNHLDSDGRNWLLEQYQLFAGKVLVVSHDRSLLRHMEGIYHLNSLGLRFYKGNYDDYFTQMSSQSEALDKQIT
HHQSEKKRLERQAQINKEKAQQREAQGNRLRKSGSQPKILLDAMKDKAGRTQGASATSHKNLKDQNQHKLQSLKEQQEQL
KPQALYLQQANRSKKHSLLTVEECRMSFGSGAPISFSLSQGERCYLTGANGCGKSTLLKAIHGQHSNYIGSIKRLGATVY
LDQHFGLLDTNDTIFDSLMTHSFGLTESDARTLLAGIGFRRDSVYRKVSHLSGGEKMKLAMLIVSHKQDTPLLLLDEPDN
HLDIDSKQVLASALREYQGAFILVSHDADFVKEVGVSQNHIRL

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=504, Percent_Identity=27.3809523809524, Blast_Score=135, Evalue=1e-31,
Organism=Homo sapiens, GI10947137, Length=531, Percent_Identity=26.1770244821092, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI27881506, Length=533, Percent_Identity=26.266416510319, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI10947135, Length=510, Percent_Identity=26.6666666666667, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI69354671, Length=510, Percent_Identity=26.6666666666667, Blast_Score=118, Evalue=1e-26,
Organism=Escherichia coli, GI1789751, Length=542, Percent_Identity=28.0442804428044, Blast_Score=161, Evalue=9e-41,
Organism=Escherichia coli, GI1787182, Length=546, Percent_Identity=29.1208791208791, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI2367384, Length=516, Percent_Identity=26.3565891472868, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI1787041, Length=546, Percent_Identity=28.021978021978, Blast_Score=141, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI17559834, Length=511, Percent_Identity=26.4187866927593, Blast_Score=135, Evalue=6e-32,
Organism=Caenorhabditis elegans, GI17553372, Length=520, Percent_Identity=29.0384615384615, Blast_Score=123, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17555318, Length=528, Percent_Identity=25.7575757575758, Blast_Score=113, Evalue=3e-25,
Organism=Saccharomyces cerevisiae, GI6321121, Length=532, Percent_Identity=26.8796992481203, Blast_Score=122, Evalue=9e-29,
Organism=Saccharomyces cerevisiae, GI6320874, Length=517, Percent_Identity=25.7253384912959, Blast_Score=90, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6323278, Length=177, Percent_Identity=32.7683615819209, Blast_Score=78, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6324314, Length=177, Percent_Identity=32.7683615819209, Blast_Score=77, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6325030, Length=203, Percent_Identity=30.5418719211823, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24666836, Length=517, Percent_Identity=28.2398452611219, Blast_Score=147, Evalue=2e-35,
Organism=Drosophila melanogaster, GI24641342, Length=514, Percent_Identity=27.431906614786, Blast_Score=136, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24642252, Length=523, Percent_Identity=26.0038240917782, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI18859989, Length=523, Percent_Identity=26.0038240917782, Blast_Score=124, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 58390; Mature: 58259

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTILANNLSFQLDTGEWLFKDITFNLNTRLTGLVGRNGAGKSLLLSLLVGQTQPTSGSV
CCCEEECCEEEEECCCCEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCC
SRQGSIGFYSQLPSKLLDSTTSIADFLGITEKLDALHAIEQGSCELQHFNIVGEDWDLQA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
NTKQLLATLKITSGLTTPCHTLSGGQLSLLQLHRLFVSHYDVLILDEPTNHLDSDGRNWL
CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHH
LEQYQLFAGKVLVVSHDRSLLRHMEGIYHLNSLGLRFYKGNYDDYFTQMSSQSEALDKQI
HHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCHHHHHHHHH
THHQSEKKRLERQAQINKEKAQQREAQGNRLRKSGSQPKILLDAMKDKAGRTQGASATSH
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCCC
KNLKDQNQHKLQSLKEQQEQLKPQALYLQQANRSKKHSLLTVEECRMSFGSGAPISFSLS
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCEEEHHHHHHHCCCCCCEEEEEC
QGERCYLTGANGCGKSTLLKAIHGQHSNYIGSIKRLGATVYLDQHFGLLDTNDTIFDSLM
CCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHH
THSFGLTESDARTLLAGIGFRRDSVYRKVSHLSGGEKMKLAMLIVSHKQDTPLLLLDEPD
HHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEECCC
NHLDIDSKQVLASALREYQGAFILVSHDADFVKEVGVSQNHIRL
CCCCCCHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PTILANNLSFQLDTGEWLFKDITFNLNTRLTGLVGRNGAGKSLLLSLLVGQTQPTSGSV
CCEEECCEEEEECCCCEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCC
SRQGSIGFYSQLPSKLLDSTTSIADFLGITEKLDALHAIEQGSCELQHFNIVGEDWDLQA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
NTKQLLATLKITSGLTTPCHTLSGGQLSLLQLHRLFVSHYDVLILDEPTNHLDSDGRNWL
CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHH
LEQYQLFAGKVLVVSHDRSLLRHMEGIYHLNSLGLRFYKGNYDDYFTQMSSQSEALDKQI
HHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCHHHHHHHHH
THHQSEKKRLERQAQINKEKAQQREAQGNRLRKSGSQPKILLDAMKDKAGRTQGASATSH
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCCC
KNLKDQNQHKLQSLKEQQEQLKPQALYLQQANRSKKHSLLTVEECRMSFGSGAPISFSLS
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCEEEHHHHHHHCCCCCCEEEEEC
QGERCYLTGANGCGKSTLLKAIHGQHSNYIGSIKRLGATVYLDQHFGLLDTNDTIFDSLM
CCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHH
THSFGLTESDARTLLAGIGFRRDSVYRKVSHLSGGEKMKLAMLIVSHKQDTPLLLLDEPD
HHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEECCC
NHLDIDSKQVLASALREYQGAFILVSHDADFVKEVGVSQNHIRL
CCCCCCHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]