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The map label for this gene is cmoA

Identifier: 218709096

GI number: 218709096

Start: 1165119

End: 1165847

Strand: Reverse

Name: cmoA

Synonym: VS_1102

Alternate gene names: 218709096

Gene position: 1165847-1165119 (Counterclockwise)

Preceding gene: 218709097

Following gene: 218709095

Centisome position: 35.34

GC content: 45.4

Gene sequence:

>729_bases
ATGAGCAACACAGACAATATCTTTTCCGCTCCTATTGATAAAATTGGAGACTTCACCTTTGATGCAAGGGTTGCTGAAGT
ATTTCCGGATATGATTCAACGCTCGGTGCCTGGTTATAGCAATATCATCTCTGCAATCGGCATGCTGGCTGAACGCTTTG
TAAAGCCACATTCAAATATTTACGATCTTGGCTGCTCGCTTGGTGCTGCGACACTTTCTATGCGTCGTCACATTCAGCAA
GAAGGCTGCACGATTTTCGCTATCGATAATTCAGAAGCCATGGTTGAACGCTGTAAGCTGCATGTAAACGCCTACCGCAG
TGACACACCGGTAGAAGTGATTGAAGCCGACATCCGTGAAGTGGAAATCAAAGACGCCTCTGTTGTGGTGCTTAACTTTA
CACTGCAATTTCTGTCTCCTGACGACCGATACGCTCTGCTTGAAAAAATTCATGCAGGCTTACGCCCGGGCGGAATCTTA
ATCCTTTCTGAAAAGTACGTATTCGAAGACGAAAGTTCAAATGAACTGCTTATCGACCTGCACCATGACTTCAAGCGTGC
AAACGGATACAGCGAGCTTGAAGTCAGCCAGAAACGCAGCGCAATTGAAAACGTGATGCGTCCTGACTCGATTACAGTTC
ACAAGCAACGTTTTGAAAAGATTGGCTTCTCAAGTAGCGAAGTGTGGTTCCAATGCTTCAACTTCGGTTCAATGTTCGCG
ATTAAATAG

Upstream 100 bases:

>100_bases
TCAGTTTTCGTGACAGCCGCGCTTTTTTTACGTAAAATACGTCCCCTTTTATTTGGTATGAATTTTGTGCCAATTACGCT
GACTGTCGAGAGAAAATGCC

Downstream 100 bases:

>100_bases
CGCACATACCCAGTCAGCTCGTACTAAAATGTCATCCTCAAGAGCGAGGAAGGAGCGTGTTGGGGGTCTCTATCAAGTAC
GATAAACCGAGACTCCCTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSNTDNIFSAPIDKIGDFTFDARVAEVFPDMIQRSVPGYSNIISAIGMLAERFVKPHSNIYDLGCSLGAATLSMRRHIQQ
EGCTIFAIDNSEAMVERCKLHVNAYRSDTPVEVIEADIREVEIKDASVVVLNFTLQFLSPDDRYALLEKIHAGLRPGGIL
ILSEKYVFEDESSNELLIDLHHDFKRANGYSELEVSQKRSAIENVMRPDSITVHKQRFEKIGFSSSEVWFQCFNFGSMFA
IK

Sequences:

>Translated_242_residues
MSNTDNIFSAPIDKIGDFTFDARVAEVFPDMIQRSVPGYSNIISAIGMLAERFVKPHSNIYDLGCSLGAATLSMRRHIQQ
EGCTIFAIDNSEAMVERCKLHVNAYRSDTPVEVIEADIREVEIKDASVVVLNFTLQFLSPDDRYALLEKIHAGLRPGGIL
ILSEKYVFEDESSNELLIDLHHDFKRANGYSELEVSQKRSAIENVMRPDSITVHKQRFEKIGFSSSEVWFQCFNFGSMFA
IK
>Mature_241_residues
SNTDNIFSAPIDKIGDFTFDARVAEVFPDMIQRSVPGYSNIISAIGMLAERFVKPHSNIYDLGCSLGAATLSMRRHIQQE
GCTIFAIDNSEAMVERCKLHVNAYRSDTPVEVIEADIREVEIKDASVVVLNFTLQFLSPDDRYALLEKIHAGLRPGGILI
LSEKYVFEDESSNELLIDLHHDFKRANGYSELEVSQKRSAIENVMRPDSITVHKQRFEKIGFSSSEVWFQCFNFGSMFAI
K

Specific function: Catalyzes the conversion of 5-methoxyuridine (mo5U) to uridine-5-oxyacetic acid (cmo5U) at position 34 in tRNA. May also participate in the methylation of uridine-5-oxyacetic acid (cmo5U) to uridine-5-oxyacetic acid methyl ester (mcmo5U)

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoA family

Homologues:

Organism=Escherichia coli, GI1788177, Length=242, Percent_Identity=67.7685950413223, Blast_Score=359, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CMOA_VIBSL (B7VMH8)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002416717.1
- ProteinModelPortal:   B7VMH8
- SMR:   B7VMH8
- GeneID:   7160694
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_1102
- HOGENOM:   HBG296860
- OMA:   YSELEVS
- ProtClustDB:   CLSK874240
- HAMAP:   MF_01589
- InterPro:   IPR013216
- InterPro:   IPR005271
- PIRSF:   PIRSF006325
- TIGRFAMs:   TIGR00740

Pfam domain/function: PF08241 Methyltransf_11

EC number: NA

Molecular weight: Translated: 27351; Mature: 27220

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: BINDING 39-39 BINDING 89-89 BINDING 132-132 BINDING 199-199

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTDNIFSAPIDKIGDFTFDARVAEVFPDMIQRSVPGYSNIISAIGMLAERFVKPHSNI
CCCCCCCHHCCHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCH
YDLGCSLGAATLSMRRHIQQEGCTIFAIDNSEAMVERCKLHVNAYRSDTPVEVIEADIRE
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
VEIKDASVVVLNFTLQFLSPDDRYALLEKIHAGLRPGGILILSEKYVFEDESSNELLIDL
EEECCCEEEEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCEEECCCCCCCEEEEE
HHDFKRANGYSELEVSQKRSAIENVMRPDSITVHKQRFEKIGFSSSEVWFQCFNFGSMFA
CHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCHHHHHHHHCCCCEEE
IK
EC
>Mature Secondary Structure 
SNTDNIFSAPIDKIGDFTFDARVAEVFPDMIQRSVPGYSNIISAIGMLAERFVKPHSNI
CCCCCCHHCCHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCH
YDLGCSLGAATLSMRRHIQQEGCTIFAIDNSEAMVERCKLHVNAYRSDTPVEVIEADIRE
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
VEIKDASVVVLNFTLQFLSPDDRYALLEKIHAGLRPGGILILSEKYVFEDESSNELLIDL
EEECCCEEEEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCEEECCCCCCCEEEEE
HHDFKRANGYSELEVSQKRSAIENVMRPDSITVHKQRFEKIGFSSSEVWFQCFNFGSMFA
CHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCHHHHHHHHCCCCEEE
IK
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA