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The map label for this gene is cmoB [H]

Identifier: 218709095

GI number: 218709095

Start: 1163965

End: 1164936

Strand: Reverse

Name: cmoB [H]

Synonym: VS_1101

Alternate gene names: 218709095

Gene position: 1164936-1163965 (Counterclockwise)

Preceding gene: 218709096

Following gene: 218709094

Centisome position: 35.31

GC content: 47.02

Gene sequence:

>972_bases
ATGTTTAATTTTGCCAATTTTTATCAACTCATTGCCCAAGACACTCGCCTTCAGCCGTGGCTTAATGTTCTTCCTCAACA
GCTGACGGATTGGCAAAATGCAGAACACGGCGACTTCGACCGTTGGTTGCGTGCACTGAATAAAATCCCGCAAGGTGTGC
CTGACCAAGTTGATCTGAAAAACTCAGTGACGATTGGCAGCTCTACACCGTTCCACACGGGTGAACTTAAAAAGTTAGAA
AGCTTACTGAAGACTTTCCACCCTTGGAGAAAAGGCCCTTACACAGTTCACGACATTCATATCGATACAGAATGGCGCAG
TGACTGGAAATGGGATCGTGTGCTTCCACATATCTCTCCATTGAAAAACCGTTCGGTTCTCGATGTAGGTTGTGGCAACG
GCTACCACATGTGGCGCATGCTAGGTGAAGGCGCTCGCTTAACGGTGGGTATCGACCCTTCTCACTTATTCTTGGTTCAG
TTTGAAGCCATTCGTAAATTGATGGGCGACGACCAACGTGCTCACCTATTACCTCTAGGTATTGAGCAACTGCCAAAACT
GGAAGCTTACGACACTGTATTCAGCATGGGCGTGCTTTACCACCGCCGTTCACCACTTGATCATTTGATTCAACTAAAAG
ACCAATTGGTATCTGGTGGCGAACTGGTACTTGAAACGTTAGTGATTGAAGGTGACGAAAACGCTGTTCTTGTGCCTGTA
GATCGCTACGCGCAAATGAGAAACGTTTACTTCTTCCCATCTGCACGCGCACTGAAACGCTGGCTTGAACAGGTAGGCTT
TGAAGACGTGCGTATCGTTGATGAAAATGTTACAACGATTGGCGAACAACGCACAACGGACTGGATGACACACAACTCTC
TACCGGATTACTTAGACCCTAATGATCCAAGTAAAACCGTAGAAGGTCACCCAGCACCAAGGCGTGCGATTCTAGTAGCG
ACAAAACCTTAA

Upstream 100 bases:

>100_bases
TAAACCGAGACTCCCTATCATGTTCGTCCCTCACTGTAGGGAATGACAAATTTAATTTCTATTTTAGGGTTTATTGACCC
TATTAACTCAGTGAAAAACT

Downstream 100 bases:

>100_bases
GCTCTGTTACACAAAACCATAAGCTCTGTCGTCATACAGCCACCGTTATTTATATGTGGGAATTTTGATAAAAAAGAGAA
CTAATTGTACAAAAGTTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MFNFANFYQLIAQDTRLQPWLNVLPQQLTDWQNAEHGDFDRWLRALNKIPQGVPDQVDLKNSVTIGSSTPFHTGELKKLE
SLLKTFHPWRKGPYTVHDIHIDTEWRSDWKWDRVLPHISPLKNRSVLDVGCGNGYHMWRMLGEGARLTVGIDPSHLFLVQ
FEAIRKLMGDDQRAHLLPLGIEQLPKLEAYDTVFSMGVLYHRRSPLDHLIQLKDQLVSGGELVLETLVIEGDENAVLVPV
DRYAQMRNVYFFPSARALKRWLEQVGFEDVRIVDENVTTIGEQRTTDWMTHNSLPDYLDPNDPSKTVEGHPAPRRAILVA
TKP

Sequences:

>Translated_323_residues
MFNFANFYQLIAQDTRLQPWLNVLPQQLTDWQNAEHGDFDRWLRALNKIPQGVPDQVDLKNSVTIGSSTPFHTGELKKLE
SLLKTFHPWRKGPYTVHDIHIDTEWRSDWKWDRVLPHISPLKNRSVLDVGCGNGYHMWRMLGEGARLTVGIDPSHLFLVQ
FEAIRKLMGDDQRAHLLPLGIEQLPKLEAYDTVFSMGVLYHRRSPLDHLIQLKDQLVSGGELVLETLVIEGDENAVLVPV
DRYAQMRNVYFFPSARALKRWLEQVGFEDVRIVDENVTTIGEQRTTDWMTHNSLPDYLDPNDPSKTVEGHPAPRRAILVA
TKP
>Mature_323_residues
MFNFANFYQLIAQDTRLQPWLNVLPQQLTDWQNAEHGDFDRWLRALNKIPQGVPDQVDLKNSVTIGSSTPFHTGELKKLE
SLLKTFHPWRKGPYTVHDIHIDTEWRSDWKWDRVLPHISPLKNRSVLDVGCGNGYHMWRMLGEGARLTVGIDPSHLFLVQ
FEAIRKLMGDDQRAHLLPLGIEQLPKLEAYDTVFSMGVLYHRRSPLDHLIQLKDQLVSGGELVLETLVIEGDENAVLVPV
DRYAQMRNVYFFPSARALKRWLEQVGFEDVRIVDENVTTIGEQRTTDWMTHNSLPDYLDPNDPSKTVEGHPAPRRAILVA
TKP

Specific function: Catalyzes the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at position 34 in tRNA [H]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoB family [H]

Homologues:

Organism=Escherichia coli, GI1788178, Length=324, Percent_Identity=64.5061728395062, Blast_Score=445, Evalue=1e-126,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010017 [H]

Pfam domain/function: PF08003 Methyltransf_9 [H]

EC number: NA

Molecular weight: Translated: 37198; Mature: 37198

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNFANFYQLIAQDTRLQPWLNVLPQQLTDWQNAEHGDFDRWLRALNKIPQGVPDQVDLK
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
NSVTIGSSTPFHTGELKKLESLLKTFHPWRKGPYTVHDIHIDTEWRSDWKWDRVLPHISP
CCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCHHHHCCCCCC
LKNRSVLDVGCGNGYHMWRMLGEGARLTVGIDPSHLFLVQFEAIRKLMGDDQRAHLLPLG
CCCCCEEEECCCCCHHHHHHHCCCCEEEEECCCCEEEEEEHHHHHHHHCCCCCEEEEECC
IEQLPKLEAYDTVFSMGVLYHRRSPLDHLIQLKDQLVSGGELVLETLVIEGDENAVLVPV
HHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHEEEEEEEEECCCCEEEEEH
DRYAQMRNVYFFPSARALKRWLEQVGFEDVRIVDENVTTIGEQRTTDWMTHNSLPDYLDP
HHHHHHCCEEECCCHHHHHHHHHHCCCCCEEEECCCHHHCCCCCCCHHHCCCCCCCCCCC
NDPSKTVEGHPAPRRAILVATKP
CCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MFNFANFYQLIAQDTRLQPWLNVLPQQLTDWQNAEHGDFDRWLRALNKIPQGVPDQVDLK
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
NSVTIGSSTPFHTGELKKLESLLKTFHPWRKGPYTVHDIHIDTEWRSDWKWDRVLPHISP
CCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCHHHHCCCCCC
LKNRSVLDVGCGNGYHMWRMLGEGARLTVGIDPSHLFLVQFEAIRKLMGDDQRAHLLPLG
CCCCCEEEECCCCCHHHHHHHCCCCEEEEECCCCEEEEEEHHHHHHHHCCCCCEEEEECC
IEQLPKLEAYDTVFSMGVLYHRRSPLDHLIQLKDQLVSGGELVLETLVIEGDENAVLVPV
HHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHEEEEEEEEECCCCEEEEEH
DRYAQMRNVYFFPSARALKRWLEQVGFEDVRIVDENVTTIGEQRTTDWMTHNSLPDYLDP
HHHHHHCCEEECCCHHHHHHHHHHCCCCCEEEECCCHHHCCCCCCCHHHCCCCCCCCCCC
NDPSKTVEGHPAPRRAILVATKP
CCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA