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The map label for this gene is ydjX [C]

Identifier: 218709080

GI number: 218709080

Start: 1144626

End: 1145420

Strand: Reverse

Name: ydjX [C]

Synonym: VS_1086

Alternate gene names: 218709080

Gene position: 1145420-1144626 (Counterclockwise)

Preceding gene: 218709081

Following gene: 218709079

Centisome position: 34.72

GC content: 42.89

Gene sequence:

>795_bases
TTGCGGCTTTTTTTATATCTGGTGAAAGTTATTCTATGCTTTGCCTGTCTATCTATACTAGTGGTATACATTGAAAAACT
AATGGTATGCATTGAAAATTTAGAGGAAGTATCAATGAGTAAAAAAATGATATTGGGTATTGTGTTGGTCATAACCATCG
TCTTGTTAGGCGTCAATTTCGGCCAGTACTTAACGCTTGAAAATGCAAAAGCCCAGCAAGCTGTTTTGAATGACTACATC
GAGAGCAATTTCATTGCCGCTGCCGCTATCTATTTTGTCGCGTATGTCATGATTACGGCTTTCTCAATTCCTGGCGCTGC
CGTTGTTACGCTGTTAGGCGCTGCGCTGTTTGGGTTTTGGAACAGTTTACTGCTGGTGTCTTTCGCGAGCGCTATTGGCG
CAACCCTCGCCTTCTTAAGTAGTCGTTACTTGTTACGTGACTGGATCCAAACCAAGTTTGGCGACAAGTTAGCCACCATC
AATAAGGGCGTTGAAAAAGACGGTGCATTTTACTTATTCTCGCTACGTCTAATTCCTGTTTTCCCATTTTTCCTTATCAA
TCTATTGATGGGTCTAACACCGATGTCGGTGAGTCGTTACTATATTACTAGCCAAATCGGTATGTTGCCGGGTACCGCCG
TTTTCTTGAATGCCGGAACTCAACTCGCAGAAATTGATTCACTTTCGGGCATCGTGTCTCCCTCAGTACTGTTGTCATTT
GCCTTACTGGGTGTGTTCCCAATTATTGCTAAATGGTTGATGAACAAATTTCGCTCAGCACCTGTCGCTGAGTAA

Upstream 100 bases:

>100_bases
TACACATTGGTCTGTTATACCGCAGCAACGTCGTGAAGAGCTTATCAATCACGTCAATTAACATTGTCAGTGCAACTATA
TAGATAACTAAGCCGCATTT

Downstream 100 bases:

>100_bases
CGTATATAACTAAATAACTTAATAACGCATGCAGCCAAATAAGGTTCTATTTCAATGAAAATCTTCAGTGCATCGAATCC
GACAGAAGCTCATATCATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MRLFLYLVKVILCFACLSILVVYIEKLMVCIENLEEVSMSKKMILGIVLVITIVLLGVNFGQYLTLENAKAQQAVLNDYI
ESNFIAAAAIYFVAYVMITAFSIPGAAVVTLLGAALFGFWNSLLLVSFASAIGATLAFLSSRYLLRDWIQTKFGDKLATI
NKGVEKDGAFYLFSLRLIPVFPFFLINLLMGLTPMSVSRYYITSQIGMLPGTAVFLNAGTQLAEIDSLSGIVSPSVLLSF
ALLGVFPIIAKWLMNKFRSAPVAE

Sequences:

>Translated_264_residues
MRLFLYLVKVILCFACLSILVVYIEKLMVCIENLEEVSMSKKMILGIVLVITIVLLGVNFGQYLTLENAKAQQAVLNDYI
ESNFIAAAAIYFVAYVMITAFSIPGAAVVTLLGAALFGFWNSLLLVSFASAIGATLAFLSSRYLLRDWIQTKFGDKLATI
NKGVEKDGAFYLFSLRLIPVFPFFLINLLMGLTPMSVSRYYITSQIGMLPGTAVFLNAGTQLAEIDSLSGIVSPSVLLSF
ALLGVFPIIAKWLMNKFRSAPVAE
>Mature_264_residues
MRLFLYLVKVILCFACLSILVVYIEKLMVCIENLEEVSMSKKMILGIVLVITIVLLGVNFGQYLTLENAKAQQAVLNDYI
ESNFIAAAAIYFVAYVMITAFSIPGAAVVTLLGAALFGFWNSLLLVSFASAIGATLAFLSSRYLLRDWIQTKFGDKLATI
NKGVEKDGAFYLFSLRLIPVFPFFLINLLMGLTPMSVSRYYITSQIGMLPGTAVFLNAGTQLAEIDSLSGIVSPSVLLSF
ALLGVFPIIAKWLMNKFRSAPVAE

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Homo sapiens, GI66392190, Length=208, Percent_Identity=26.4423076923077, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI18087813, Length=186, Percent_Identity=26.8817204301075, Blast_Score=65, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17532687, Length=252, Percent_Identity=27.3809523809524, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI115533280, Length=172, Percent_Identity=23.2558139534884, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115533785, Length=170, Percent_Identity=28.8235294117647, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI18859941, Length=200, Percent_Identity=28.5, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 28947; Mature: 28947

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFLYLVKVILCFACLSILVVYIEKLMVCIENLEEVSMSKKMILGIVLVITIVLLGVNF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GQYLTLENAKAQQAVLNDYIESNFIAAAAIYFVAYVMITAFSIPGAAVVTLLGAALFGFW
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
NSLLLVSFASAIGATLAFLSSRYLLRDWIQTKFGDKLATINKGVEKDGAFYLFSLRLIPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHH
FPFFLINLLMGLTPMSVSRYYITSQIGMLPGTAVFLNAGTQLAEIDSLSGIVSPSVLLSF
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHEEECCCHHHHHHHHHHHCCHHHHHHH
ALLGVFPIIAKWLMNKFRSAPVAE
HHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRLFLYLVKVILCFACLSILVVYIEKLMVCIENLEEVSMSKKMILGIVLVITIVLLGVNF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GQYLTLENAKAQQAVLNDYIESNFIAAAAIYFVAYVMITAFSIPGAAVVTLLGAALFGFW
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
NSLLLVSFASAIGATLAFLSSRYLLRDWIQTKFGDKLATINKGVEKDGAFYLFSLRLIPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHH
FPFFLINLLMGLTPMSVSRYYITSQIGMLPGTAVFLNAGTQLAEIDSLSGIVSPSVLLSF
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHEEECCCHHHHHHHHHHHCCHHHHHHH
ALLGVFPIIAKWLMNKFRSAPVAE
HHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]