| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is 218709045
Identifier: 218709045
GI number: 218709045
Start: 1099142
End: 1100158
Strand: Reverse
Name: 218709045
Synonym: VS_1051
Alternate gene names: NA
Gene position: 1100158-1099142 (Counterclockwise)
Preceding gene: 218709046
Following gene: 218709044
Centisome position: 33.35
GC content: 43.36
Gene sequence:
>1017_bases TTGAGTAACCGCTACATGAAATACCTTCGTTATTTACCACTGATTCTCCTCTCTTGTTCATCACTGGCATCTGAACGCTC TACGTTAACTTTTGCGTTAGACAACGATGGTATCTTTGGTGTCGATCAAGACTATACCAACGGTTTATTTCTGGGTTACA CATCGTCAAGTATTACGCCATACGCTTGGGTAAAACCATTGAGCCTTTCCTATTGGGGCGCAAGCTCTTTAGATAAGTGG GAAATCACCATTGGTCACAAGATGTACACGCCTTCTGACATTGAATTAGAAAAACCATCAGCCAATGATCGTCCATACGC AGGTTACCTACATACAGAATTCAACTACATCAGCTTGAACCCACAACAAGCCCAGCGTTTTAACATCACGTTTGGTACTA CAGGCGAGCGAGCACTTTCCGAAGACGCTCAAAAACTGGTTCACTCAATCACTAAATCAGACGAACCTATGGGTTGGAAG TATCAAGTTGATGATGAGTACGCAGGTAGCCTTGGTTACTTAAGTCATTTCAACCTAATGCGTAATCAAGCATTAGCGAA TACTGACTTCGAGATATCTAACGTATCAGAGATCAACGTTGGTAATTTTAGAAGCGACATTTCTACTGGATTTATGTTCC GTTGGGGTACTGACTTGGGCGGCAACTTTGGCGCAGCGAACATCAGCACAGAAAACCCATTCAAAGCAGGCATGATAGGT GCTTCAAATACAGGTTGGTTTACTTACGCAGGTCTTGAAGGACGTTACCGATTTAATGACCTGACTGTCGAAGGGGATCG TTCCGGTGTTAATGATTATGCAAAGAAAAATGACCAAGATCCTGCGATCTACGATGTCACTTTAGAGAACATTCAAGCGA CAGCGATACTCGGTGTTGCTTGGTATAACCAATACGTTGGTGCCTCTTTCGCACTTACCGCAAAAACACCCGATTACCAA GAAGCAACAAAGTCAGTGTACGGTACTGGTGGCATCACTATGTTTGCTTTCTTCTAG
Upstream 100 bases:
>100_bases CTCCCCCAAGAAAGATTAGATTGGCCACAAAAAGCACACTCGCATTCACTTTTTTTCTACAAATCCACTCAAACTACGGT ACTATTTCTGTTCATCATTT
Downstream 100 bases:
>100_bases CCATAGAAAAGGCTTTCACCGCCTTCTTTTCAAGTTAAATAAGGCAATCACCTTCACAGGTGATTGCCTTTATTTTTAAA GACCTAGTTACCATTTGACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MSNRYMKYLRYLPLILLSCSSLASERSTLTFALDNDGIFGVDQDYTNGLFLGYTSSSITPYAWVKPLSLSYWGASSLDKW EITIGHKMYTPSDIELEKPSANDRPYAGYLHTEFNYISLNPQQAQRFNITFGTTGERALSEDAQKLVHSITKSDEPMGWK YQVDDEYAGSLGYLSHFNLMRNQALANTDFEISNVSEINVGNFRSDISTGFMFRWGTDLGGNFGAANISTENPFKAGMIG ASNTGWFTYAGLEGRYRFNDLTVEGDRSGVNDYAKKNDQDPAIYDVTLENIQATAILGVAWYNQYVGASFALTAKTPDYQ EATKSVYGTGGITMFAFF
Sequences:
>Translated_338_residues MSNRYMKYLRYLPLILLSCSSLASERSTLTFALDNDGIFGVDQDYTNGLFLGYTSSSITPYAWVKPLSLSYWGASSLDKW EITIGHKMYTPSDIELEKPSANDRPYAGYLHTEFNYISLNPQQAQRFNITFGTTGERALSEDAQKLVHSITKSDEPMGWK YQVDDEYAGSLGYLSHFNLMRNQALANTDFEISNVSEINVGNFRSDISTGFMFRWGTDLGGNFGAANISTENPFKAGMIG ASNTGWFTYAGLEGRYRFNDLTVEGDRSGVNDYAKKNDQDPAIYDVTLENIQATAILGVAWYNQYVGASFALTAKTPDYQ EATKSVYGTGGITMFAFF >Mature_337_residues SNRYMKYLRYLPLILLSCSSLASERSTLTFALDNDGIFGVDQDYTNGLFLGYTSSSITPYAWVKPLSLSYWGASSLDKWE ITIGHKMYTPSDIELEKPSANDRPYAGYLHTEFNYISLNPQQAQRFNITFGTTGERALSEDAQKLVHSITKSDEPMGWKY QVDDEYAGSLGYLSHFNLMRNQALANTDFEISNVSEINVGNFRSDISTGFMFRWGTDLGGNFGAANISTENPFKAGMIGA SNTGWFTYAGLEGRYRFNDLTVEGDRSGVNDYAKKNDQDPAIYDVTLENIQATAILGVAWYNQYVGASFALTAKTPDYQE ATKSVYGTGGITMFAFF
Specific function: Unknown
COG id: COG3528
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37687; Mature: 37556
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNRYMKYLRYLPLILLSCSSLASERSTLTFALDNDGIFGVDQDYTNGLFLGYTSSSITP CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCCEEEEECCCCCCC YAWVKPLSLSYWGASSLDKWEITIGHKMYTPSDIELEKPSANDRPYAGYLHTEFNYISLN EEEECEEEEEECCCCCCCEEEEEECCEEECCCCCEEECCCCCCCCEEEEEEEEEEEEEEC PQQAQRFNITFGTTGERALSEDAQKLVHSITKSDEPMGWKYQVDDEYAGSLGYLSHFNLM HHHCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHH RNQALANTDFEISNVSEINVGNFRSDISTGFMFRWGTDLGGNFGAANISTENPFKAGMIG HHHHHCCCCCEECCCCEECCCCCHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEC ASNTGWFTYAGLEGRYRFNDLTVEGDRSGVNDYAKKNDQDPAIYDVTLENIQATAILGVA CCCCCEEEEECCCCEEEEEEEEEECCCCCCCHHHHCCCCCCEEEEEEECCEEEEEEEEEH WYNQYVGASFALTAKTPDYQEATKSVYGTGGITMFAFF HHHHHCCCEEEEEECCCCHHHHHHHHCCCCCEEEEEEC >Mature Secondary Structure SNRYMKYLRYLPLILLSCSSLASERSTLTFALDNDGIFGVDQDYTNGLFLGYTSSSITP CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCCEEEEECCCCCCC YAWVKPLSLSYWGASSLDKWEITIGHKMYTPSDIELEKPSANDRPYAGYLHTEFNYISLN EEEECEEEEEECCCCCCCEEEEEECCEEECCCCCEEECCCCCCCCEEEEEEEEEEEEEEC PQQAQRFNITFGTTGERALSEDAQKLVHSITKSDEPMGWKYQVDDEYAGSLGYLSHFNLM HHHCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHH RNQALANTDFEISNVSEINVGNFRSDISTGFMFRWGTDLGGNFGAANISTENPFKAGMIG HHHHHCCCCCEECCCCEECCCCCHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEC ASNTGWFTYAGLEGRYRFNDLTVEGDRSGVNDYAKKNDQDPAIYDVTLENIQATAILGVA CCCCCEEEEECCCCEEEEEEEEEECCCCCCCHHHHCCCCCCEEEEEEECCEEEEEEEEEH WYNQYVGASFALTAKTPDYQEATKSVYGTGGITMFAFF HHHHHCCCEEEEEECCCCHHHHHHHHCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA