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The map label for this gene is yfbU [C]

Identifier: 218709043

GI number: 218709043

Start: 1097517

End: 1098017

Strand: Reverse

Name: yfbU [C]

Synonym: VS_1049

Alternate gene names: 218709043

Gene position: 1098017-1097517 (Counterclockwise)

Preceding gene: 218709044

Following gene: 218709041

Centisome position: 33.28

GC content: 42.32

Gene sequence:

>501_bases
ATGGAAATGACCAATGCTCAGCGTCTAATTCTATCAAATCAATACTACCTAATGTCTCAAATGGATCCTGAGAACTCAGC
TAAATACCAGCGTCTACAAACGATTGTAGAACGTGGTTACGAACTCCAAATGCGTGAGCTTAACAAAGAATTTGGTTGTT
TAACTGAAGCAGAATGTCGCGAAATTATCGACATTATGGAGATGTACCATGCGATGCAAGAGTCGAATAAAATGCTTGCA
GATCAAGAGCGTGCGGAAGTCGACCAACGTCGTCTACAATTCCTAGGTTTCGATATCGCTTCTGAAGCACAAATCGTACA
TTACGTGCGTTTCCTTGTTGACTCTGAAGGACTTTACCCTCAATTTGACAAAGCAGATCACCACTTCAATAGCCAAATGC
CAATGTTAGAAAAGTACCGTCGCATGCTAACAACGTGGCGTAACTGCCCTCGTCAGTACCACCTATGTGCGACAGAGCTA
TCTCAAATTTTTAGTGCTTAG

Upstream 100 bases:

>100_bases
ATTAAATCCGTGTTGAGATCATGTTTCCACTCTTAGGAATGCTGTTACTCTTACTGCAACAAAATAATATAACATTTAGT
TTTTTAGTGAGGTTCCTCCC

Downstream 100 bases:

>100_bases
TGCTTAGTGCTTAGAAGATTAGCTTTAAGTGGGCTTATAAAATTTCAAAAAAGGGTTACTCATCATGAGTAACCCTTTTT
TAATATTCATATATGAAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MEMTNAQRLILSNQYYLMSQMDPENSAKYQRLQTIVERGYELQMRELNKEFGCLTEAECREIIDIMEMYHAMQESNKMLA
DQERAEVDQRRLQFLGFDIASEAQIVHYVRFLVDSEGLYPQFDKADHHFNSQMPMLEKYRRMLTTWRNCPRQYHLCATEL
SQIFSA

Sequences:

>Translated_166_residues
MEMTNAQRLILSNQYYLMSQMDPENSAKYQRLQTIVERGYELQMRELNKEFGCLTEAECREIIDIMEMYHAMQESNKMLA
DQERAEVDQRRLQFLGFDIASEAQIVHYVRFLVDSEGLYPQFDKADHHFNSQMPMLEKYRRMLTTWRNCPRQYHLCATEL
SQIFSA
>Mature_166_residues
MEMTNAQRLILSNQYYLMSQMDPENSAKYQRLQTIVERGYELQMRELNKEFGCLTEAECREIIDIMEMYHAMQESNKMLA
DQERAEVDQRRLQFLGFDIASEAQIVHYVRFLVDSEGLYPQFDKADHHFNSQMPMLEKYRRMLTTWRNCPRQYHLCATEL
SQIFSA

Specific function: Unknown

COG id: COG3013

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0304 family

Homologues:

Organism=Escherichia coli, GI87082081, Length=166, Percent_Identity=61.4457831325301, Blast_Score=217, Evalue=4e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1049_VIBSL (B7VM08)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002416664.1
- ProteinModelPortal:   B7VM08
- SMR:   B7VM08
- GeneID:   7160641
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_1049
- HOGENOM:   HBG297202
- OMA:   ADHHFNS
- ProtClustDB:   PRK05445
- HAMAP:   MF_00762
- InterPro:   IPR005587
- InterPro:   IPR023146
- InterPro:   IPR023145
- Gene3D:   G3DSA:1.10.3190.10
- Gene3D:   G3DSA:1.10.287.680
- PIRSF:   PIRSF006272
- ProDom:   PD035118

Pfam domain/function: PF03887 YfbU

EC number: NA

Molecular weight: Translated: 19884; Mature: 19884

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
7.2 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
7.2 %Met     (Mature Protein)
9.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMTNAQRLILSNQYYLMSQMDPENSAKYQRLQTIVERGYELQMRELNKEFGCLTEAECR
CCCCCHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
EIIDIMEMYHAMQESNKMLADQERAEVDQRRLQFLGFDIASEAQIVHYVRFLVDSEGLYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
QFDKADHHFNSQMPMLEKYRRMLTTWRNCPRQYHLCATELSQIFSA
CCCCHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEMTNAQRLILSNQYYLMSQMDPENSAKYQRLQTIVERGYELQMRELNKEFGCLTEAECR
CCCCCHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
EIIDIMEMYHAMQESNKMLADQERAEVDQRRLQFLGFDIASEAQIVHYVRFLVDSEGLYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
QFDKADHHFNSQMPMLEKYRRMLTTWRNCPRQYHLCATELSQIFSA
CCCCHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA