| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is yfbV [C]
Identifier: 218708993
GI number: 218708993
Start: 1035456
End: 1035908
Strand: Direct
Name: yfbV [C]
Synonym: VS_0999
Alternate gene names: 218708993
Gene position: 1035456-1035908 (Clockwise)
Preceding gene: 218708989
Following gene: 218708994
Centisome position: 31.38
GC content: 44.37
Gene sequence:
>453_bases ATGAGCAATAGAGTTGGTTTAGCGAGTAGTTTAAAAGATGGCCAAAAGTACATGGATCTCTGGCCCGTCCGCAAAGAGTT AAACTCGATCTTCCCTGAGCAGCGCATTATCAAAGCGACGCGTTTTGGCGTGAAAGTGATGCCAGCGATAGCTGCTATTA GTGTTCTTACACAAATGGTCTTTAATAATTATCAAGCGATGCCACAAGCTGTGGTCATGGCTTTGTTTGCAATCAGCTTA CCGCTTCAAGGCATGTGGTGGTTAGGTAATCGCTCAAACACAAAACTTCCACCTGCGCTAGTCTCATGGTATCGCGAACT TCACGAGAAGATCACTGAAACGGGTTTCGCGTTAGAGCCAATGAAATCGCGTCCTCGTTATAAAGAATTGGCGATCATTT TAAATCGCGCATTTCGTCAGCTAGATAAATCCTCAATGGAACGTTGGTTCTAA
Upstream 100 bases:
>100_bases TTGTGCAAATATAACAAAAAAATTTGAAAGAATATTATTTTTCGTCAAATTTTTGTGTTTTTAGTTGATGGTTTCAACTT TTTTTTAATGGGAGACTCAT
Downstream 100 bases:
>100_bases TGAGTTTCAACTCTCCCTCTTGTCTGAGAGCAACTATTCATCATTGATGGTTTGTTCTCAGGTTTGATTTTTATTATTTT CGCTTCGCTTTTATTCACCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 150; Mature: 149
Protein sequence:
>150_residues MSNRVGLASSLKDGQKYMDLWPVRKELNSIFPEQRIIKATRFGVKVMPAIAAISVLTQMVFNNYQAMPQAVVMALFAISL PLQGMWWLGNRSNTKLPPALVSWYRELHEKITETGFALEPMKSRPRYKELAIILNRAFRQLDKSSMERWF
Sequences:
>Translated_150_residues MSNRVGLASSLKDGQKYMDLWPVRKELNSIFPEQRIIKATRFGVKVMPAIAAISVLTQMVFNNYQAMPQAVVMALFAISL PLQGMWWLGNRSNTKLPPALVSWYRELHEKITETGFALEPMKSRPRYKELAIILNRAFRQLDKSSMERWF >Mature_149_residues SNRVGLASSLKDGQKYMDLWPVRKELNSIFPEQRIIKATRFGVKVMPAIAAISVLTQMVFNNYQAMPQAVVMALFAISLP LQGMWWLGNRSNTKLPPALVSWYRELHEKITETGFALEPMKSRPRYKELAIILNRAFRQLDKSSMERWF
Specific function: Unknown
COG id: COG3092
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0208 family
Homologues:
Organism=Escherichia coli, GI1788632, Length=147, Percent_Identity=44.8979591836735, Blast_Score=131, Evalue=2e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y999_VIBSL (B7VLV8)
Other databases:
- EMBL: FM954972 - RefSeq: YP_002416614.1 - GeneID: 7160591 - GenomeReviews: FM954972_GR - KEGG: vsp:VS_0999 - HOGENOM: HBG297010 - OMA: FACSLPM - ProtClustDB: PRK01816 - HAMAP: MF_01101 - InterPro: IPR007334
Pfam domain/function: PF04217 DUF412
EC number: NA
Molecular weight: Translated: 17349; Mature: 17218
Theoretical pI: Translated: 10.86; Mature: 10.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0x19d97260)-; HASH(0x19cf2be4)-;
Cys/Met content:
0.0 %Cys (Translated Protein) 6.0 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.4 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNRVGLASSLKDGQKYMDLWPVRKELNSIFPEQRIIKATRFGVKVMPAIAAISVLTQMV CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNNYQAMPQAVVMALFAISLPLQGMWWLGNRSNTKLPPALVSWYRELHEKITETGFALEP HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC MKSRPRYKELAIILNRAFRQLDKSSMERWF HHCCCHHHHHHHHHHHHHHHHHHHHHHHCH >Mature Secondary Structure SNRVGLASSLKDGQKYMDLWPVRKELNSIFPEQRIIKATRFGVKVMPAIAAISVLTQMV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNNYQAMPQAVVMALFAISLPLQGMWWLGNRSNTKLPPALVSWYRELHEKITETGFALEP HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC MKSRPRYKELAIILNRAFRQLDKSSMERWF HHCCCHHHHHHHHHHHHHHHHHHHHHHHCH
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA