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The map label for this gene is oppC [H]

Identifier: 218708986

GI number: 218708986

Start: 1024739

End: 1025641

Strand: Direct

Name: oppC [H]

Synonym: VS_0992

Alternate gene names: 218708986

Gene position: 1024739-1025641 (Clockwise)

Preceding gene: 218708985

Following gene: 218708987

Centisome position: 31.06

GC content: 46.07

Gene sequence:

>903_bases
ATGTTGAAGAAAAAAGAAAATTTAGAAGCGATCGAAAAGTTCTCTGAGAGCTTAGAGATTGAAGGTCGTAGTTTGTGGCA
GGACGCGCGCATTCGTTTCATGCGAAACAAAGCTGCGATGGTGAGCCTGTGCATTCTTACGCTTATGGTACTGGCAGTTA
TCTTCTTACCAATGCTGGCTCAGTACACTTATGACGATACTGATTGGTACGCAATGCACGTTGGTCCGAATGCGGATCAC
TGGTTCGGTACAGATAGCTTAGGCCGTGATTTGTACGTTCGTACTCTTGTCGGTGGCCGCATCTCATTGATGGTCGGTGT
GATGGGTGCCTTCGTAGCGGTACTGATTGGTACGCTTTACGGTGCAGCTTCAGGCTTCATCGGCGGTCGTACTGACCGAG
TGATGATGCGTATCCTAGAGATCTTGTACGCAGTACCATTCATGTTCCTAGTAATCGTACTGGTAACGTTCTTTGGTCGT
AACATCGTCCTAATCTTCGTTGCTATTGGTGCGATTGCTTGGCTAGATATGGCGCGTATTGTACGTGGTCAAACGTTGAG
TTTACGTAGTAAAGAGTTCATTGAAGCTGCACACGTTTGTGGTGTAAGCAAATGGAAGATCATTACACGTCACATTGTAC
CGAACGTACTGGGTATCGTAGCGGTTTATTCTACGCTGCTTATTCCAAGCATGATCCTTACAGAATCATTCTTATCTTTC
CTTGGTCTTGGTGTTCAAGAGCCTATGACAAGTTGGGGCGCGCTATTACAAGAAGGTTCGCAAACAATGGAAGTTGCAAT
CTGGCAATTAACATTCCCTGCGGCATTCATGGTAGTTACGCTGTTCTGCTTTAACTACGTAGGTGATGGTCTGCGCGACG
CGCTTGATCCAAAAGACAGATAA

Upstream 100 bases:

>100_bases
CATCTTGATTGGTTTCCTATTCATCTTGTTCAACGCAATTGTTGATATTTTGCTAGCGCTGATTGACCCGAAAATTCGCT
ACTAACAGGGACGCATGGTT

Downstream 100 bases:

>100_bases
CGAAATAGCAATTAAAAGCTATAAAAGATTAAGGAAGCAATAATGAGCTTATTAGATGTCAAAGATCTGCGCGTCGAATT
TACCACGCAAGATGGTATCG

Product: oligopeptide transport system permease OppC

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MLKKKENLEAIEKFSESLEIEGRSLWQDARIRFMRNKAAMVSLCILTLMVLAVIFLPMLAQYTYDDTDWYAMHVGPNADH
WFGTDSLGRDLYVRTLVGGRISLMVGVMGAFVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAVPFMFLVIVLVTFFGR
NIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWKIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSF
LGLGVQEPMTSWGALLQEGSQTMEVAIWQLTFPAAFMVVTLFCFNYVGDGLRDALDPKDR

Sequences:

>Translated_300_residues
MLKKKENLEAIEKFSESLEIEGRSLWQDARIRFMRNKAAMVSLCILTLMVLAVIFLPMLAQYTYDDTDWYAMHVGPNADH
WFGTDSLGRDLYVRTLVGGRISLMVGVMGAFVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAVPFMFLVIVLVTFFGR
NIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWKIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSF
LGLGVQEPMTSWGALLQEGSQTMEVAIWQLTFPAAFMVVTLFCFNYVGDGLRDALDPKDR
>Mature_300_residues
MLKKKENLEAIEKFSESLEIEGRSLWQDARIRFMRNKAAMVSLCILTLMVLAVIFLPMLAQYTYDDTDWYAMHVGPNADH
WFGTDSLGRDLYVRTLVGGRISLMVGVMGAFVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAVPFMFLVIVLVTFFGR
NIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWKIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSF
LGLGVQEPMTSWGALLQEGSQTMEVAIWQLTFPAAFMVVTLFCFNYVGDGLRDALDPKDR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=302, Percent_Identity=68.2119205298013, Blast_Score=392, Evalue=1e-110,
Organism=Escherichia coli, GI1787054, Length=277, Percent_Identity=40.072202166065, Blast_Score=211, Evalue=4e-56,
Organism=Escherichia coli, GI1787760, Length=290, Percent_Identity=35.1724137931034, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1789889, Length=225, Percent_Identity=33.3333333333333, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1789964, Length=272, Percent_Identity=33.4558823529412, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1788505, Length=224, Percent_Identity=31.6964285714286, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787549, Length=283, Percent_Identity=28.9752650176678, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33510; Mature: 33510

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKKENLEAIEKFSESLEIEGRSLWQDARIRFMRNKAAMVSLCILTLMVLAVIFLPMLA
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYTYDDTDWYAMHVGPNADHWFGTDSLGRDLYVRTLVGGRISLMVGVMGAFVAVLIGTLY
HCCCCCCCEEEEEECCCCCCCCCCCHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GAASGFIGGRTDRVMMRILEILYAVPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VRGQTLSLRSKEFIEAAHVCGVSKWKIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSF
HCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLGVQEPMTSWGALLQEGSQTMEVAIWQLTFPAAFMVVTLFCFNYVGDGLRDALDPKDR
HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCC
>Mature Secondary Structure
MLKKKENLEAIEKFSESLEIEGRSLWQDARIRFMRNKAAMVSLCILTLMVLAVIFLPMLA
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYTYDDTDWYAMHVGPNADHWFGTDSLGRDLYVRTLVGGRISLMVGVMGAFVAVLIGTLY
HCCCCCCCEEEEEECCCCCCCCCCCHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GAASGFIGGRTDRVMMRILEILYAVPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VRGQTLSLRSKEFIEAAHVCGVSKWKIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSF
HCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLGVQEPMTSWGALLQEGSQTMEVAIWQLTFPAAFMVVTLFCFNYVGDGLRDALDPKDR
HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]