Click here to switch to the map view.

The map label for this gene is ccmF [H]

Identifier: 218708855

GI number: 218708855

Start: 874279

End: 876249

Strand: Direct

Name: ccmF [H]

Synonym: VS_0855

Alternate gene names: 218708855

Gene position: 874279-876249 (Clockwise)

Preceding gene: 218708854

Following gene: 218708856

Centisome position: 26.5

GC content: 47.23

Gene sequence:

>1971_bases
ATGATAGCCGAGATCGGCCATTTTGCGATGATCCTGTCTTTGGGACTTGCACTGCTGCTAAGCGTGCTCCCACTGTATGG
AGCCGCTCGAAATAACACATTATTGATGAACAGTGCACGACCGCTGTCGTGGGGTATGTTCGGATTCCTAGCGATTTCGT
TCTTTATCTTGTGTTACGCGTTCTACACAAATGATTTTACGATTCAATACGTAGCAAGTAACTCGAATAGCCAACTGCCT
TGGTACTACCGAATTACCGCGGTTTGGGGGGCTCATGAAGGCTCACTACTGCTTTGGGTTCTAATCCAAGCGGGTTGGAC
GGTAGCAGTTGCAACGTTTAGTCGTGGTATGCCTCAAGAGTCTGTGGCTCGCGTACTGGCGATTATGGGTTTAATTACTG
TCGGCTTCTTGCTGTTCATTATCGTAACGTCTAACCCGTTTTTACGTACATTGCCTTTCTTCCCTGTTGATGGCCGTGAC
TTGAACCCACTACTGCAAGATCCGGGTTTGATTATTCACCCGCCAATGCTTTACATGGGTTATGTAGGTTTCTCGGTAGC
GTTCTCTTTTGCAATCGCTTCTCTAATGAGCGGTCGTTTAGATACGGCATGGGCTCGTTGGTCTCGTCCTTGGACAATCG
CTGCTTGGTTATTCCTAACAGTAGGTATCGCACTTGGTTCATGGTGGGCTTACTACGAACTTGGCTGGGGTGGCTGGTGG
TTCTGGGATCCAGTAGAAAACGCTTCATTCATGCCTTGGTTAGCTGGTACTGCTCTAATGCACTCACTAGCGGTAACCGA
AAAGCGTGGCACATTTAAAGCTTGGACAGTCTTGCTGGCTATCTCTGCATTCTCACTAAGCTTACTAGGTACATTCTTAG
TTCGTTCGGGCATCTTGGTATCGGTTCACGCATTCGCGTCGGATCCTGCCCGTGGTATGTTTATTCTAGGTTTCTTAGTG
TTCGTTATCGGTGGTTCACTGTTGTTGTTTGCTGTTAAAGGCGCATCGGTTCGTGTACGTGGTAACTTCGATTTGGTTTC
TCGTGAAAACGCGCTACTCGGCAACAACATCCTATTGATTGCTGCGCTTGTCGTTGTGTTAGTCGGTACGCTACTACCAT
TAGTTCACAAACAGTTAGGCTTGGGTTCGGTATCTATCGGTGCACCATTCTTTGATATGTTGTTCTTCTGGTTAATGATC
CCGTTCTCGTTCTTACTTGGTATCGGTCCACTGATCCGTTGGAAACGTGACAACCTATCTAAGCTCGTTAAACCTATGCT
GATCTCAGGTGTATTCTCACTGGGCTTAAGTGCGCTAATGGTTACGATTTTGGCTGACCGTTTCAGCGGTACCGCTTTTG
CCGGTTGGGTAATGGCATTCTGGATTATCTTCATGCATGGCTTTGAGCTTCATGAACGTGCGACACACCGTCATACATTC
CTGAAAGGCCTGACTAAGCTACCTCGTAGCCACTGGGCGATGATGTGTGGTCACATTGGTTTGGCCGTGACAGTGATTGG
TATTGCGATGGTGCAAAACTACAGCATCGAACGTGACGTACGCTTAGCACCAGGTGAAAGCTACCAACTTGAAGAGTACA
GCTTCCTGTTTACAGGAGTTCGTGACAAAGATGGCCCTAACTACGATGGTTACATTGCTGACTTTGAAATTACCAAAGAA
GGCAAATACATCAACACGCTTCACGCTGAAAAACGTTTCTACACAACCGCTAAGTCGATGATGACAGAAGCGGCGATTGA
TCGTGGCGTAACGCGCGACCTTTACATCGCAATGGGTGAGCGTTTAGACGACAATAAATCTTGGGCTGTGCGTATCTACT
ACAAACCATTTGTACGTTGGATCTGGGCTGGTTCTCTGATTATGTCGATTGGTGGTGTTATTGCTATCAGTGACCGTCGT
TACCGCTTCCGTAAGCCAACGAAAAAGTCTACTAAAGAGCAGGAGGCTTAA

Upstream 100 bases:

>100_bases
AGCACGATGAAGAATATATGCCTTCTGAAGTTGCTGAAGCAATGAAGAAAACTCATGAGCCTTTGCAATACACGACTGAA
CAAAAAGAAGGAAATGCTCA

Downstream 100 bases:

>100_bases
TTCGAATGAACAAGAAGATTTTATTCATTCCATTGATTGCGTTCATGGTTCTAGCTGGAATCTTTGCGACTCAATTGATG
CGTAACCAGTCGGGTGATGA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 656; Mature: 656

Protein sequence:

>656_residues
MIAEIGHFAMILSLGLALLLSVLPLYGAARNNTLLMNSARPLSWGMFGFLAISFFILCYAFYTNDFTIQYVASNSNSQLP
WYYRITAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQESVARVLAIMGLITVGFLLFIIVTSNPFLRTLPFFPVDGRD
LNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMSGRLDTAWARWSRPWTIAAWLFLTVGIALGSWWAYYELGWGGWW
FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGILVSVHAFASDPARGMFILGFLV
FVIGGSLLLFAVKGASVRVRGNFDLVSRENALLGNNILLIAALVVVLVGTLLPLVHKQLGLGSVSIGAPFFDMLFFWLMI
PFSFLLGIGPLIRWKRDNLSKLVKPMLISGVFSLGLSALMVTILADRFSGTAFAGWVMAFWIIFMHGFELHERATHRHTF
LKGLTKLPRSHWAMMCGHIGLAVTVIGIAMVQNYSIERDVRLAPGESYQLEEYSFLFTGVRDKDGPNYDGYIADFEITKE
GKYINTLHAEKRFYTTAKSMMTEAAIDRGVTRDLYIAMGERLDDNKSWAVRIYYKPFVRWIWAGSLIMSIGGVIAISDRR
YRFRKPTKKSTKEQEA

Sequences:

>Translated_656_residues
MIAEIGHFAMILSLGLALLLSVLPLYGAARNNTLLMNSARPLSWGMFGFLAISFFILCYAFYTNDFTIQYVASNSNSQLP
WYYRITAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQESVARVLAIMGLITVGFLLFIIVTSNPFLRTLPFFPVDGRD
LNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMSGRLDTAWARWSRPWTIAAWLFLTVGIALGSWWAYYELGWGGWW
FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGILVSVHAFASDPARGMFILGFLV
FVIGGSLLLFAVKGASVRVRGNFDLVSRENALLGNNILLIAALVVVLVGTLLPLVHKQLGLGSVSIGAPFFDMLFFWLMI
PFSFLLGIGPLIRWKRDNLSKLVKPMLISGVFSLGLSALMVTILADRFSGTAFAGWVMAFWIIFMHGFELHERATHRHTF
LKGLTKLPRSHWAMMCGHIGLAVTVIGIAMVQNYSIERDVRLAPGESYQLEEYSFLFTGVRDKDGPNYDGYIADFEITKE
GKYINTLHAEKRFYTTAKSMMTEAAIDRGVTRDLYIAMGERLDDNKSWAVRIYYKPFVRWIWAGSLIMSIGGVIAISDRR
YRFRKPTKKSTKEQEA
>Mature_656_residues
MIAEIGHFAMILSLGLALLLSVLPLYGAARNNTLLMNSARPLSWGMFGFLAISFFILCYAFYTNDFTIQYVASNSNSQLP
WYYRITAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQESVARVLAIMGLITVGFLLFIIVTSNPFLRTLPFFPVDGRD
LNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMSGRLDTAWARWSRPWTIAAWLFLTVGIALGSWWAYYELGWGGWW
FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGILVSVHAFASDPARGMFILGFLV
FVIGGSLLLFAVKGASVRVRGNFDLVSRENALLGNNILLIAALVVVLVGTLLPLVHKQLGLGSVSIGAPFFDMLFFWLMI
PFSFLLGIGPLIRWKRDNLSKLVKPMLISGVFSLGLSALMVTILADRFSGTAFAGWVMAFWIIFMHGFELHERATHRHTF
LKGLTKLPRSHWAMMCGHIGLAVTVIGIAMVQNYSIERDVRLAPGESYQLEEYSFLFTGVRDKDGPNYDGYIADFEITKE
GKYINTLHAEKRFYTTAKSMMTEAAIDRGVTRDLYIAMGERLDDNKSWAVRIYYKPFVRWIWAGSLIMSIGGVIAISDRR
YRFRKPTKKSTKEQEA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=653, Percent_Identity=62.3277182235835, Blast_Score=790, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=580, Percent_Identity=36.0344827586207, Blast_Score=297, Evalue=2e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 73366; Mature: 73366

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAEIGHFAMILSLGLALLLSVLPLYGAARNNTLLMNSARPLSWGMFGFLAISFFILCYA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
FYTNDFTIQYVASNSNSQLPWYYRITAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQE
HHCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEHHHCCCCEEEEHHHCCCCHH
SVARVLAIMGLITVGFLLFIIVTSNPFLRTLPFFPVDGRDLNPLLQDPGLIIHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHCCCCEEECHHHHHH
YVGFSVAFSFAIASLMSGRLDTAWARWSRPWTIAAWLFLTVGIALGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEE
FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGILV
EECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPARGMFILGFLVFVIGGSLLLFAVKGASVRVRGNFDLVSRENALLGNNILLI
EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEECCEEEEECCCCCCCCCHHHH
AALVVVLVGTLLPLVHKQLGLGSVSIGAPFFDMLFFWLMIPFSFLLGIGPLIRWKRDNLS
HHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCHHHEECCCCHH
KLVKPMLISGVFSLGLSALMVTILADRFSGTAFAGWVMAFWIIFMHGFELHERATHRHTF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
LKGLTKLPRSHWAMMCGHIGLAVTVIGIAMVQNYSIERDVRLAPGESYQLEEYSFLFTGV
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEECC
RDKDGPNYDGYIADFEITKEGKYINTLHAEKRFYTTAKSMMTEAAIDRGVTRDLYIAMGE
CCCCCCCCCCEEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
RLDDNKSWAVRIYYKPFVRWIWAGSLIMSIGGVIAISDRRYRFRKPTKKSTKEQEA
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCCCCCCCCC
>Mature Secondary Structure
MIAEIGHFAMILSLGLALLLSVLPLYGAARNNTLLMNSARPLSWGMFGFLAISFFILCYA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
FYTNDFTIQYVASNSNSQLPWYYRITAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQE
HHCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEHHHCCCCEEEEHHHCCCCHH
SVARVLAIMGLITVGFLLFIIVTSNPFLRTLPFFPVDGRDLNPLLQDPGLIIHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHCCCCEEECHHHHHH
YVGFSVAFSFAIASLMSGRLDTAWARWSRPWTIAAWLFLTVGIALGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEE
FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGILV
EECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPARGMFILGFLVFVIGGSLLLFAVKGASVRVRGNFDLVSRENALLGNNILLI
EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEECCEEEEECCCCCCCCCHHHH
AALVVVLVGTLLPLVHKQLGLGSVSIGAPFFDMLFFWLMIPFSFLLGIGPLIRWKRDNLS
HHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCHHHEECCCCHH
KLVKPMLISGVFSLGLSALMVTILADRFSGTAFAGWVMAFWIIFMHGFELHERATHRHTF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
LKGLTKLPRSHWAMMCGHIGLAVTVIGIAMVQNYSIERDVRLAPGESYQLEEYSFLFTGV
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEECC
RDKDGPNYDGYIADFEITKEGKYINTLHAEKRFYTTAKSMMTEAAIDRGVTRDLYIAMGE
CCCCCCCCCCEEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
RLDDNKSWAVRIYYKPFVRWIWAGSLIMSIGGVIAISDRRYRFRKPTKKSTKEQEA
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]