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The map label for this gene is ccmB [H]

Identifier: 218708850

GI number: 218708850

Start: 871999

End: 872667

Strand: Direct

Name: ccmB [H]

Synonym: VS_0850

Alternate gene names: 218708850

Gene position: 871999-872667 (Clockwise)

Preceding gene: 218708849

Following gene: 218708851

Centisome position: 26.43

GC content: 46.04

Gene sequence:

>669_bases
ATGATCTCTTCAATGACAACGATCATCCGACGTGAGCTATTGATCGCATTTCGTCGCCAAGCCGATATCTTTAACCCTCT
GTGGTTTTTTATTATTGTCATCACCCTTTTCCCATTGAGTATCGGCCCTGAGCCAAACCTACTTGCACGTATTGCTGCAG
GTATTGTTTGGGTAGCGGCTTTGCTTTCTGCATTGCTCTCTTTAGAGCGTTTGTTTCGTGATGATTTTCAAGATGGCGCG
CTTGAGCAGATGATGTTGATGCCCATCCCGTTGCAGTTGGTAGTCTTGTCCAAGGTCATAGCGCACTGGTTATTGACAGG
GTTACCATTAATATTGATCAGTCCGTTGTTGGCGGTACTGCTGTCCTTGGATTTCGATACTTGGTTATCGGTAGTCTTAA
CGTTATCGGTCGGTACGCCTGCATTAAGCTTTATTGGTGCGATTGGTGTGGCTTTAACGGTTGGGTTACAAAAAGGTGGT
GTGCTGTTAAGTCTGCTTATTTTGCCGTTGTATATCCCAATTCTTATATTTGCTACATCAGCGATTGATGCCGCAGCGTT
AGGCGTTGCGTATAACGGACAATTAGCGGTGTTAGGGGCAATGTTAATGGGCGCGATGACGCTCACCCCATTTGCCATCA
GTGCAGCACTGAGAGTGAGTGTTAACTAG

Upstream 100 bases:

>100_bases
TCTCAGCATGCAGATAACGGTGGCATTGTGTTATTAACCACACACCAAGATATGTTTGCTGATAGCCCGAAACTAAGAAA
AATAAAGTTGGGTGAGTAAT

Downstream 100 bases:

>100_bases
TTAATTACCTGGTTAAGATTAACTACGCACTCACCAGCACTTTGCATGTTCAAAGTGAACTATTTAAAGCCTTCAAACTC
CTAGAGTCACTGAAAGAAGC

Product: cytochrome c-type biogenesis protein CcmB

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmB [H]

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MISSMTTIIRRELLIAFRRQADIFNPLWFFIIVITLFPLSIGPEPNLLARIAAGIVWVAALLSALLSLERLFRDDFQDGA
LEQMMLMPIPLQLVVLSKVIAHWLLTGLPLILISPLLAVLLSLDFDTWLSVVLTLSVGTPALSFIGAIGVALTVGLQKGG
VLLSLLILPLYIPILIFATSAIDAAALGVAYNGQLAVLGAMLMGAMTLTPFAISAALRVSVN

Sequences:

>Translated_222_residues
MISSMTTIIRRELLIAFRRQADIFNPLWFFIIVITLFPLSIGPEPNLLARIAAGIVWVAALLSALLSLERLFRDDFQDGA
LEQMMLMPIPLQLVVLSKVIAHWLLTGLPLILISPLLAVLLSLDFDTWLSVVLTLSVGTPALSFIGAIGVALTVGLQKGG
VLLSLLILPLYIPILIFATSAIDAAALGVAYNGQLAVLGAMLMGAMTLTPFAISAALRVSVN
>Mature_222_residues
MISSMTTIIRRELLIAFRRQADIFNPLWFFIIVITLFPLSIGPEPNLLARIAAGIVWVAALLSALLSLERLFRDDFQDGA
LEQMMLMPIPLQLVVLSKVIAHWLLTGLPLILISPLLAVLLSLDFDTWLSVVLTLSVGTPALSFIGAIGVALTVGLQKGG
VLLSLLILPLYIPILIFATSAIDAAALGVAYNGQLAVLGAMLMGAMTLTPFAISAALRVSVN

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG2386

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmB/CycW/HelB family [H]

Homologues:

Organism=Escherichia coli, GI1788528, Length=215, Percent_Identity=66.5116279069767, Blast_Score=236, Evalue=1e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003544 [H]

Pfam domain/function: PF03379 CcmB [H]

EC number: NA

Molecular weight: Translated: 23785; Mature: 23785

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSMTTIIRRELLIAFRRQADIFNPLWFFIIVITLFPLSIGPEPNLLARIAAGIVWVAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LLSALLSLERLFRDDFQDGALEQMMLMPIPLQLVVLSKVIAHWLLTGLPLILISPLLAVL
HHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
LSLDFDTWLSVVLTLSVGTPALSFIGAIGVALTVGLQKGGVLLSLLILPLYIPILIFATS
HHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
AIDAAALGVAYNGQLAVLGAMLMGAMTLTPFAISAALRVSVN
HHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MISSMTTIIRRELLIAFRRQADIFNPLWFFIIVITLFPLSIGPEPNLLARIAAGIVWVAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LLSALLSLERLFRDDFQDGALEQMMLMPIPLQLVVLSKVIAHWLLTGLPLILISPLLAVL
HHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
LSLDFDTWLSVVLTLSVGTPALSFIGAIGVALTVGLQKGGVLLSLLILPLYIPILIFATS
HHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
AIDAAALGVAYNGQLAVLGAMLMGAMTLTPFAISAALRVSVN
HHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]