| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218708677
Identifier: 218708677
GI number: 218708677
Start: 682037
End: 683347
Strand: Direct
Name: 218708677
Synonym: VS_0656
Alternate gene names: NA
Gene position: 682037-683347 (Clockwise)
Preceding gene: 218708676
Following gene: 218708678
Centisome position: 20.67
GC content: 42.56
Gene sequence:
>1311_bases ATGACCTCGGTAAAGCAGCAAGCTGGAGTGGCTACGTTGTTAATCACATCTGTTTTAGTGTTGAGTGCTTTAATTGTTAC TTTGGGCACCTATCGCAGCGTTTTTCATCAAATTAAGGTCGCGCAGAATGAAGTTCAAGTCCGCAAAGCTCATTGGAACG CCGAGGCTGGGTTGGAGTGTGGTTTTACCTATATAGCTGAAAATGATCTCACGGCAATTCCCAATGATTTAATGAATCAC TGTCAGCAGTCGAAAGTCCTTACGTTGAAATCAGATAACCTAACACCGAATATATTGGTGTCGAGTGCTCACTATTTATC TCTGAACAAAGAGATAAGTTTTAACAATTCGTCGGGGCTAGGGGCGATGCAAACCAATTCGAGTTTGGAGTTTATTTCTG ATCACAATATCGATATTACCCCAGATATTAGTCTTACTGCGGTCGGTGGTATTAACGAATGTGTGTCTGTTCGGTTCTTA GATAGTGTGATCTATAAAAACCAAGGCGGCGGGCGTCTGAAGACAATCACACCTACGGGCGGCCTCCCTCCTTTTCCTAC CTTTGAGTCTTGCCAACCGACAACCGATATTAACCGCAATGCAACCATTGATTCAGTTGGGTCATTGCCTTCGAATGCTT TTCAATCAGATTTCAAATTTGACCCAGCCATCGATACTTTCTCTAATTACTTTGGGGTATCTAAAACGCCAGAAAATATT GACCAGATTAAGCGTGATTATCATGTGATTGACCTCATTGACAGGACTGTATCTCCCCCCAAGCACATTGATTTAGTCAA TGGGAAGTATCAAGGTAATAAGTGTAGCCAAGCGATTAATAAAGCCTTTACTAGTGGTAAAGATAAGGTGTGGGTGATCG GTGATTGCGTGGTCTATCACCCACCAATTAATGTGGTAGAACCTATCCCCGGAATTATTACTCCACGTTCATTAGTGATT CAAGATGGCATCGTTGCGAACGGCAATGCAAGTGTGTTTGATGGTTCCTTTTATCACCTAAATGATATGAGTATATACGA CGAACCAGCCTCCCCTGATGTTGATACGGACCTGTTGAGCGGCTTATGGGCCAAAGTTCCAAATACGATACCTATCGCCG GCTTAGTGCAGAGCAATTCGGTTTATATTGGATTTGCTTCTTTTTTCCCCAAGGGAGGGATGTTCTTTGATTCAGTTGGT GGGTTATCGACAATTCAAGGTTCGATTAACTTAGATTACACAGGCGAATACAACCCCCATAGTGTTCCTTTGAAAGCCAA ATGGAAAAAGGGATCATGGAATGACTTATAA
Upstream 100 bases:
>100_bases GGGTGAGCACTACGCTCACTGATTTGAATATTGTTGCGTCAATTCCGAGTGCTGGGATCTCTAAAGGCGTCGCTATAACC GTTAAGCAAAGGAATTGGCA
Downstream 100 bases:
>100_bases AAATTCAGGTTTTAGCTTGATAGAGGTCCTGATCTCTTTTCTATTGATCGGTATCGCTTCGCTAGGGTTGGTTAAGCTAC AGGTCTATGCAGAACAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MTSVKQQAGVATLLITSVLVLSALIVTLGTYRSVFHQIKVAQNEVQVRKAHWNAEAGLECGFTYIAENDLTAIPNDLMNH CQQSKVLTLKSDNLTPNILVSSAHYLSLNKEISFNNSSGLGAMQTNSSLEFISDHNIDITPDISLTAVGGINECVSVRFL DSVIYKNQGGGRLKTITPTGGLPPFPTFESCQPTTDINRNATIDSVGSLPSNAFQSDFKFDPAIDTFSNYFGVSKTPENI DQIKRDYHVIDLIDRTVSPPKHIDLVNGKYQGNKCSQAINKAFTSGKDKVWVIGDCVVYHPPINVVEPIPGIITPRSLVI QDGIVANGNASVFDGSFYHLNDMSIYDEPASPDVDTDLLSGLWAKVPNTIPIAGLVQSNSVYIGFASFFPKGGMFFDSVG GLSTIQGSINLDYTGEYNPHSVPLKAKWKKGSWNDL
Sequences:
>Translated_436_residues MTSVKQQAGVATLLITSVLVLSALIVTLGTYRSVFHQIKVAQNEVQVRKAHWNAEAGLECGFTYIAENDLTAIPNDLMNH CQQSKVLTLKSDNLTPNILVSSAHYLSLNKEISFNNSSGLGAMQTNSSLEFISDHNIDITPDISLTAVGGINECVSVRFL DSVIYKNQGGGRLKTITPTGGLPPFPTFESCQPTTDINRNATIDSVGSLPSNAFQSDFKFDPAIDTFSNYFGVSKTPENI DQIKRDYHVIDLIDRTVSPPKHIDLVNGKYQGNKCSQAINKAFTSGKDKVWVIGDCVVYHPPINVVEPIPGIITPRSLVI QDGIVANGNASVFDGSFYHLNDMSIYDEPASPDVDTDLLSGLWAKVPNTIPIAGLVQSNSVYIGFASFFPKGGMFFDSVG GLSTIQGSINLDYTGEYNPHSVPLKAKWKKGSWNDL >Mature_435_residues TSVKQQAGVATLLITSVLVLSALIVTLGTYRSVFHQIKVAQNEVQVRKAHWNAEAGLECGFTYIAENDLTAIPNDLMNHC QQSKVLTLKSDNLTPNILVSSAHYLSLNKEISFNNSSGLGAMQTNSSLEFISDHNIDITPDISLTAVGGINECVSVRFLD SVIYKNQGGGRLKTITPTGGLPPFPTFESCQPTTDINRNATIDSVGSLPSNAFQSDFKFDPAIDTFSNYFGVSKTPENID QIKRDYHVIDLIDRTVSPPKHIDLVNGKYQGNKCSQAINKAFTSGKDKVWVIGDCVVYHPPINVVEPIPGIITPRSLVIQ DGIVANGNASVFDGSFYHLNDMSIYDEPASPDVDTDLLSGLWAKVPNTIPIAGLVQSNSVYIGFASFFPKGGMFFDSVGG LSTIQGSINLDYTGEYNPHSVPLKAKWKKGSWNDL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47356; Mature: 47225
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSVKQQAGVATLLITSVLVLSALIVTLGTYRSVFHQIKVAQNEVQVRKAHWNAEAGLEC CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHCCCCCCCCCC GFTYIAENDLTAIPNDLMNHCQQSKVLTLKSDNLTPNILVSSAHYLSLNKEISFNNSSGL CEEEEECCCCCCCCHHHHHHHHHCCEEEEECCCCCCEEEEECEEEEEECCEEECCCCCCC GAMQTNSSLEFISDHNIDITPDISLTAVGGINECVSVRFLDSVIYKNQGGGRLKTITPTG CEEECCCCEEEEECCCCEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECCCC GLPPFPTFESCQPTTDINRNATIDSVGSLPSNAFQSDFKFDPAIDTFSNYFGVSKTPENI CCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHCCCCCCCCHHHHHHHCCCCCCHHHH DQIKRDYHVIDLIDRTVSPPKHIDLVNGKYQGNKCSQAINKAFTSGKDKVWVIGDCVVYH HHHHHCCHHEEHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEC PPINVVEPIPGIITPRSLVIQDGIVANGNASVFDGSFYHLNDMSIYDEPASPDVDTDLLS CCCCCCCCCCCCCCCCEEEEECCEEECCCCCEECCCEEEECCCEEECCCCCCCCCHHHHH GLWAKVPNTIPIAGLVQSNSVYIGFASFFPKGGMFFDSVGGLSTIQGSINLDYTGEYNPH HHHHHCCCCCCEEEEEECCCEEEEEHHHCCCCCEEEECCCCCEEEECCEEEEECCCCCCC SVPLKAKWKKGSWNDL CCCEEEEECCCCCCCC >Mature Secondary Structure TSVKQQAGVATLLITSVLVLSALIVTLGTYRSVFHQIKVAQNEVQVRKAHWNAEAGLEC CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHCCCCCCCCCC GFTYIAENDLTAIPNDLMNHCQQSKVLTLKSDNLTPNILVSSAHYLSLNKEISFNNSSGL CEEEEECCCCCCCCHHHHHHHHHCCEEEEECCCCCCEEEEECEEEEEECCEEECCCCCCC GAMQTNSSLEFISDHNIDITPDISLTAVGGINECVSVRFLDSVIYKNQGGGRLKTITPTG CEEECCCCEEEEECCCCEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECCCC GLPPFPTFESCQPTTDINRNATIDSVGSLPSNAFQSDFKFDPAIDTFSNYFGVSKTPENI CCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHCCCCCCCCHHHHHHHCCCCCCHHHH DQIKRDYHVIDLIDRTVSPPKHIDLVNGKYQGNKCSQAINKAFTSGKDKVWVIGDCVVYH HHHHHCCHHEEHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEC PPINVVEPIPGIITPRSLVIQDGIVANGNASVFDGSFYHLNDMSIYDEPASPDVDTDLLS CCCCCCCCCCCCCCCCEEEEECCEEECCCCCEECCCEEEECCCEEECCCCCCCCCHHHHH GLWAKVPNTIPIAGLVQSNSVYIGFASFFPKGGMFFDSVGGLSTIQGSINLDYTGEYNPH HHHHHCCCCCCEEEEEECCCEEEEEHHHCCCCCEEEECCCCCEEEECCEEEEECCCCCCC SVPLKAKWKKGSWNDL CCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA