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The map label for this gene is secF [H]

Identifier: 218708624

GI number: 218708624

Start: 626888

End: 627835

Strand: Direct

Name: secF [H]

Synonym: VS_0602

Alternate gene names: 218708624

Gene position: 626888-627835 (Clockwise)

Preceding gene: 218708623

Following gene: 218708627

Centisome position: 19.0

GC content: 46.52

Gene sequence:

>948_bases
ATGTTTCAGATTCTAAAAGCAGACAAAATGATCGACTTCATGCGTTGGTCAAAGGTTGCCTTTTTATTCTCAATCTTGAT
GATTGGTACTGCTATCTTCACCCTAACAACGAAATCGTTGAATTGGGGTCTAGATTTTACCGGCGGAACCCTGATTGAAG
TGGGCTTTGAGGAGCCAGCAAACCTACCTGATATTCGAAGCGCACTAGAAGCTGAAGGCTTTGGTGATGCTACGGTTCAG
AACTTTGGTTCTGCGCGTGAGGTAATGGTTCGTCTACGTCCACGTGATGGTGTTGCGGGCGAAACGCTTGGTAACCAAAT
CCTGTCTGCAATTAAAGATGGTACTGGTGAGCAAGTTGAGATGCGTCGTATCGAGTTCGTTGGTCCAAACGTGGGTGATG
AACTAACAGAAGCTGGTGGCCTTGCTATCCTTGTTTCTCTTATCTGTATCTTGATCTACGTATCAGTGCGATTTGAATGG
CGATTAGCTGCAGGTGCGGTATTAGCCCTAGCGCACGACGTTATCATCACACTAGGCGTGTTCTCTCTAATGCAAATTGA
GGTCGACCTTACTATCGTGGCAGCCTTGCTAACGGTAGTCGGTTACTCCCTCAACGATACCATCGTTGTATTCGACCGTA
TTCGTGAGAACTTCCGTAAGATGCGTAAAGGCGAGGCACCTGAAGTGCTGAACAGCTCAATCACACAAACATTGAGCCGT
ACATTGATCACTTCTGGTACAACGTTATTCGTAGTTATCGCACTGTTCGTTCAGGGCGGCGCTATGATTCACGGCTTTGC
GACTGCACTTCTACTGGGTATTACCGTTGGTACTTACTCTTCTATCTACGTTGCATCTGCACTAGCTATGAAGTTGGGTA
TTACGCGTGAACACCTAATGCCACCACAAGTGGACAAAGAAGGTGAAGAGTTTGACGAAATGCCTTAG

Upstream 100 bases:

>100_bases
CTTCAATGTTTACAGCTATTATCGGAACACGTTGTATCGTGAACCTGATGTATGGCGGCAAACGCGTTAAGAAACTGTCG
ATCTAAGGCTAGGAATTAAT

Downstream 100 bases:

>100_bases
GCCGCGGCTTAACAACTTTCGCTAAACCAAAAAAACCGCTGGGCAACTAGCGGTTTTTTTATGTCTGTATATTGTGGGTT
AGCTTTTGGAACCGACTGTA

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MFQILKADKMIDFMRWSKVAFLFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEEPANLPDIRSALEAEGFGDATVQ
NFGSAREVMVRLRPRDGVAGETLGNQILSAIKDGTGEQVEMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEW
RLAAGAVLALAHDVIITLGVFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSR
TLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITREHLMPPQVDKEGEEFDEMP

Sequences:

>Translated_315_residues
MFQILKADKMIDFMRWSKVAFLFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEEPANLPDIRSALEAEGFGDATVQ
NFGSAREVMVRLRPRDGVAGETLGNQILSAIKDGTGEQVEMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEW
RLAAGAVLALAHDVIITLGVFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSR
TLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITREHLMPPQVDKEGEEFDEMP
>Mature_315_residues
MFQILKADKMIDFMRWSKVAFLFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEEPANLPDIRSALEAEGFGDATVQ
NFGSAREVMVRLRPRDGVAGETLGNQILSAIKDGTGEQVEMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEW
RLAAGAVLALAHDVIITLGVFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSR
TLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITREHLMPPQVDKEGEEFDEMP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=309, Percent_Identity=54.0453074433657, Blast_Score=352, Evalue=2e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34286; Mature: 34286

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQILKADKMIDFMRWSKVAFLFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEEPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEECCCCEEEEECCCCCC
NLPDIRSALEAEGFGDATVQNFGSAREVMVRLRPRDGVAGETLGNQILSAIKDGTGEQVE
CCHHHHHHHHCCCCCCHHHHHHCCHHHHHEEECCCCCCCHHHHHHHHHHHHHCCCCCHHH
MRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLGV
HHHHEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHH
FSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSR
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
TLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITREHLM
HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
PPQVDKEGEEFDEMP
CCCCCCCCCHHCCCC
>Mature Secondary Structure
MFQILKADKMIDFMRWSKVAFLFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEEPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEECCCCEEEEECCCCCC
NLPDIRSALEAEGFGDATVQNFGSAREVMVRLRPRDGVAGETLGNQILSAIKDGTGEQVE
CCHHHHHHHHCCCCCCHHHHHHCCHHHHHEEECCCCCCCHHHHHHHHHHHHHCCCCCHHH
MRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLGV
HHHHEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHH
FSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAPEVLNSSITQTLSR
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
TLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITREHLM
HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
PPQVDKEGEEFDEMP
CCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]