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The map label for this gene is yaaJ [H]

Identifier: 218708538

GI number: 218708538

Start: 522819

End: 524249

Strand: Direct

Name: yaaJ [H]

Synonym: VS_0504

Alternate gene names: 218708538

Gene position: 522819-524249 (Clockwise)

Preceding gene: 218708536

Following gene: 218708539

Centisome position: 15.85

GC content: 47.31

Gene sequence:

>1431_bases
GTGACAGACTTAATCAATTTGATGAACGATCTCCTTTGGGGATCTATCTTAGTTTACTTACTCGTTGGTGTGGGTATCTA
CTTCACTGTACGACTAGGTTTCATTCAATTCCGCCATTTCGGCCACATGTTTTCTGTTCTTAGAAACAGCCGTAAAGCAG
ACAGTGCAGGTATCTCCTCTTTCCAAGCACTTTGTACTAGTCTAGCAGCACGTGTCGGTACGGGTAACATGGCTGGTGTT
GCTGTAGCACTAACCGCTGGTGGCCCTGGCGCTATCTTCTGGATGTGGCTAATTGCCATGCTAGGTATGGCAACATCGTT
TGCAGAAAGCACACTGGCACAGCTATACAAAACGCGTGATAACGACGGTAACTACCGCGGCGGCCCTGCATACTACATGG
AGAAAGGCCTAGGTATGCGTTGGATGGGGGTTCTATTCTCTATCTTCCTAATCATTGCATTCGGTCTTGTATTCAACGCG
GTTCAAGCGAACGCGATTGCAAGCGCAATGAACACGGCATTCGACTTTGAGCGCAGCTACGTTGGTGTTGGTATCGTAAT
CATCTCTGCATTCGTTATCTTCGGTGGTATCCGTAAGATTGCTCGCACTGCAGAAATCATTGTTCCTATCATGGCACTGG
CTTACTTAGCTATCGCTATCTACGTAATGCTAATGAACATTGAGAAAGTGCCTGAAGTTTTGGCTCTTATCTTCAAGAGT
GCATTCGGTCTGCAAGAAGCAGCTGCGGGTGGCTTAGGTTACGCAATCGCACAAGCGATGATTAACGGCATCAAACGTGG
TTTGTTCTCGAACGAAGCGGGTATGGGTTCTGCGCCAAACGCAGCAGCTTCTGCTACGCCTTACCCACCGCACCCAGCAT
CACAAGGTTATGTGCAAATGCTAGGCGTGTTCATGGACACGATTGTTATCTGTTCTGCAACAGTAGCAATCATCCTGATG
TCTGGTGAGTATGTACCACACGGTGAAGTAACGGGTATCGAACTAACGCAACGTGCACTAACAGCACAAGTCGGCGAATG
GGGTGGCATCTTTGTAGCGGTAGCGATTTTCTTCTTCGCTTTCACTTCAATCATTGCAAACTACTCGTACGCAGAAACAA
ACCTTATCTTCTTAGAGCACAACAACAAGAAGGGCCTAGTGCTGTTCCGTATCGTTGTACTGGGTATGGTTATGTTCGGT
TCTCTCGCGACACTGCCAACGGTATGGGCATTGGCTGACGTATCGATGGGCTTAATGGCGATTGTGAACTTGGTAGCGAT
CATTTTGCTATCGGGTATCGTGATTAAGCTAGCGAAAGACTACAACCGTCAATTAGACGCGGGTAAAGTACCCACGTTCG
ATGCGGATGATTTCCCAGAGCTTAAGGCTCAATTGGAAGATGGTATTTGGGTTAACAACAAGAAGAAGTAA

Upstream 100 bases:

>100_bases
ATATAAATCTAATGCCGACACAACTATTGACACTGGCATAGGTGATCTAGAGGAAGGCTAGGAAGCAAGATCGGTGCTTA
AACTCAATTACGAGGTTCAC

Downstream 100 bases:

>100_bases
TCTTGTTGGAGTGATTCATCACTCATCCTAAAATCATTAGAAAGGCTAAGGTTTCGACCTTAGCCTTTTTCTTTGCCTGC
AATTTCTATCTGTCTGCGAT

Product: putative sodium/alanine symporter

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MTDLINLMNDLLWGSILVYLLVGVGIYFTVRLGFIQFRHFGHMFSVLRNSRKADSAGISSFQALCTSLAARVGTGNMAGV
AVALTAGGPGAIFWMWLIAMLGMATSFAESTLAQLYKTRDNDGNYRGGPAYYMEKGLGMRWMGVLFSIFLIIAFGLVFNA
VQANAIASAMNTAFDFERSYVGVGIVIISAFVIFGGIRKIARTAEIIVPIMALAYLAIAIYVMLMNIEKVPEVLALIFKS
AFGLQEAAAGGLGYAIAQAMINGIKRGLFSNEAGMGSAPNAAASATPYPPHPASQGYVQMLGVFMDTIVICSATVAIILM
SGEYVPHGEVTGIELTQRALTAQVGEWGGIFVAVAIFFFAFTSIIANYSYAETNLIFLEHNNKKGLVLFRIVVLGMVMFG
SLATLPTVWALADVSMGLMAIVNLVAIILLSGIVIKLAKDYNRQLDAGKVPTFDADDFPELKAQLEDGIWVNNKKK

Sequences:

>Translated_476_residues
MTDLINLMNDLLWGSILVYLLVGVGIYFTVRLGFIQFRHFGHMFSVLRNSRKADSAGISSFQALCTSLAARVGTGNMAGV
AVALTAGGPGAIFWMWLIAMLGMATSFAESTLAQLYKTRDNDGNYRGGPAYYMEKGLGMRWMGVLFSIFLIIAFGLVFNA
VQANAIASAMNTAFDFERSYVGVGIVIISAFVIFGGIRKIARTAEIIVPIMALAYLAIAIYVMLMNIEKVPEVLALIFKS
AFGLQEAAAGGLGYAIAQAMINGIKRGLFSNEAGMGSAPNAAASATPYPPHPASQGYVQMLGVFMDTIVICSATVAIILM
SGEYVPHGEVTGIELTQRALTAQVGEWGGIFVAVAIFFFAFTSIIANYSYAETNLIFLEHNNKKGLVLFRIVVLGMVMFG
SLATLPTVWALADVSMGLMAIVNLVAIILLSGIVIKLAKDYNRQLDAGKVPTFDADDFPELKAQLEDGIWVNNKKK
>Mature_475_residues
TDLINLMNDLLWGSILVYLLVGVGIYFTVRLGFIQFRHFGHMFSVLRNSRKADSAGISSFQALCTSLAARVGTGNMAGVA
VALTAGGPGAIFWMWLIAMLGMATSFAESTLAQLYKTRDNDGNYRGGPAYYMEKGLGMRWMGVLFSIFLIIAFGLVFNAV
QANAIASAMNTAFDFERSYVGVGIVIISAFVIFGGIRKIARTAEIIVPIMALAYLAIAIYVMLMNIEKVPEVLALIFKSA
FGLQEAAAGGLGYAIAQAMINGIKRGLFSNEAGMGSAPNAAASATPYPPHPASQGYVQMLGVFMDTIVICSATVAIILMS
GEYVPHGEVTGIELTQRALTAQVGEWGGIFVAVAIFFFAFTSIIANYSYAETNLIFLEHNNKKGLVLFRIVVLGMVMFGS
LATLPTVWALADVSMGLMAIVNLVAIILLSGIVIKLAKDYNRQLDAGKVPTFDADDFPELKAQLEDGIWVNNKKK

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=476, Percent_Identity=50.2100840336134, Blast_Score=475, Evalue=1e-135,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 51190; Mature: 51059

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLINLMNDLLWGSILVYLLVGVGIYFTVRLGFIQFRHFGHMFSVLRNSRKADSAGISS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
FQALCTSLAARVGTGNMAGVAVALTAGGPGAIFWMWLIAMLGMATSFAESTLAQLYKTRD
HHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NDGNYRGGPAYYMEKGLGMRWMGVLFSIFLIIAFGLVFNAVQANAIASAMNTAFDFERSY
CCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGVGIVIISAFVIFGGIRKIARTAEIIVPIMALAYLAIAIYVMLMNIEKVPEVLALIFKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFGLQEAAAGGLGYAIAQAMINGIKRGLFSNEAGMGSAPNAAASATPYPPHPASQGYVQM
HHCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
LGVFMDTIVICSATVAIILMSGEYVPHGEVTGIELTQRALTAQVGEWGGIFVAVAIFFFA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
FTSIIANYSYAETNLIFLEHNNKKGLVLFRIVVLGMVMFGSLATLPTVWALADVSMGLMA
HHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNLVAIILLSGIVIKLAKDYNRQLDAGKVPTFDADDFPELKAQLEDGIWVNNKKK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TDLINLMNDLLWGSILVYLLVGVGIYFTVRLGFIQFRHFGHMFSVLRNSRKADSAGISS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
FQALCTSLAARVGTGNMAGVAVALTAGGPGAIFWMWLIAMLGMATSFAESTLAQLYKTRD
HHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NDGNYRGGPAYYMEKGLGMRWMGVLFSIFLIIAFGLVFNAVQANAIASAMNTAFDFERSY
CCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGVGIVIISAFVIFGGIRKIARTAEIIVPIMALAYLAIAIYVMLMNIEKVPEVLALIFKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFGLQEAAAGGLGYAIAQAMINGIKRGLFSNEAGMGSAPNAAASATPYPPHPASQGYVQM
HHCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
LGVFMDTIVICSATVAIILMSGEYVPHGEVTGIELTQRALTAQVGEWGGIFVAVAIFFFA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
FTSIIANYSYAETNLIFLEHNNKKGLVLFRIVVLGMVMFGSLATLPTVWALADVSMGLMA
HHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNLVAIILLSGIVIKLAKDYNRQLDAGKVPTFDADDFPELKAQLEDGIWVNNKKK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1630901; 9278503 [H]