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The map label for this gene is rraA [C]

Identifier: 218708516

GI number: 218708516

Start: 505271

End: 505756

Strand: Direct

Name: rraA [C]

Synonym: VS_0480

Alternate gene names: 218708516

Gene position: 505271-505756 (Clockwise)

Preceding gene: 218708514

Following gene: 218708518

Centisome position: 15.31

GC content: 44.86

Gene sequence:

>486_bases
ATGCACGATATAACACCTGACTTATGTGATGAGTTTGAAAGCAAAGTCACGCTACTGAATATGCCATTACAGAACTTCGG
CCAGCGTGGTGCGTTCTGGGGAAAAATTGTAACAGTTCGTTGTTATCACGATAATTCCAAGGTTCGCGAGGTTTTAGAGA
CCGATGGCAGTGGCAAAGTACTCGTTGTAGACGGTAATGGCTCGTGTCAAAAAGCGTTACTTGGCGACCAATTGGCTATT
CTAGCCATCGAAAATGGTTGGGAAGGCGTAATTGTGAATGGTGCGGTGCGTGATGTTGCGATGATGGCGCAGATGGATCT
TGGTGTTCAAGCTCTCGGAGCCTCTCCATTTAAAACCGAGAAGCACGGTGTTGGGCAAGTGAATGTGACGCTCTCTATAC
ACAATCAACTGATTCAGCCTGGTGATTACATTTATGCCGATTGGAATGGTGTGTTAATTTCAACGGAATTGTTGATTGAA
TCTTAA

Upstream 100 bases:

>100_bases
TTGGGCATAGAGCAATGAAAACAAAGGATTAATTTTAATAATATATAAAAGCATAGAGGCTCACCTGACTTAATAGGTTT
GCCTTACTCACGGAGGATAT

Downstream 100 bases:

>100_bases
CGGGCTCATCAATAAAGAAGTGGGATAGATTAGAAGCGAAACCCTAATCCTACCTCAACACCTTGTTGCCACTCTTCATA
ATCAAGGGTGGCATGCATAT

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MHDITPDLCDEFESKVTLLNMPLQNFGQRGAFWGKIVTVRCYHDNSKVREVLETDGSGKVLVVDGNGSCQKALLGDQLAI
LAIENGWEGVIVNGAVRDVAMMAQMDLGVQALGASPFKTEKHGVGQVNVTLSIHNQLIQPGDYIYADWNGVLISTELLIE
S

Sequences:

>Translated_161_residues
MHDITPDLCDEFESKVTLLNMPLQNFGQRGAFWGKIVTVRCYHDNSKVREVLETDGSGKVLVVDGNGSCQKALLGDQLAI
LAIENGWEGVIVNGAVRDVAMMAQMDLGVQALGASPFKTEKHGVGQVNVTLSIHNQLIQPGDYIYADWNGVLISTELLIE
S
>Mature_161_residues
MHDITPDLCDEFESKVTLLNMPLQNFGQRGAFWGKIVTVRCYHDNSKVREVLETDGSGKVLVVDGNGSCQKALLGDQLAI
LAIENGWEGVIVNGAVRDVAMMAQMDLGVQALGASPFKTEKHGVGQVNVTLSIHNQLIQPGDYIYADWNGVLISTELLIE
S

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=154, Percent_Identity=39.6103896103896, Blast_Score=132, Evalue=9e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17513; Mature: 17513

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDITPDLCDEFESKVTLLNMPLQNFGQRGAFWGKIVTVRCYHDNSKVREVLETDGSGKV
CCCCCHHHHHHHHCCEEEEECCHHHCCCCCCEEEEEEEEEEEECCHHHHHHHHCCCCCEE
LVVDGNGSCQKALLGDQLAILAIENGWEGVIVNGAVRDVAMMAQMDLGVQALGASPFKTE
EEEECCCCCCCHHCCCCEEEEEEECCCCEEEEECHHHHHHHHHHHCCCEEECCCCCCCCC
KHGVGQVNVTLSIHNQLIQPGDYIYADWNGVLISTELLIES
CCCCCEEEEEEEEECCCCCCCCEEEECCCCEEEEEEEEEEC
>Mature Secondary Structure
MHDITPDLCDEFESKVTLLNMPLQNFGQRGAFWGKIVTVRCYHDNSKVREVLETDGSGKV
CCCCCHHHHHHHHCCEEEEECCHHHCCCCCCEEEEEEEEEEEECCHHHHHHHHCCCCCEE
LVVDGNGSCQKALLGDQLAILAIENGWEGVIVNGAVRDVAMMAQMDLGVQALGASPFKTE
EEEECCCCCCCHHCCCCEEEEEEECCCCEEEEECHHHHHHHHHHHCCCEEECCCCCCCCC
KHGVGQVNVTLSIHNQLIQPGDYIYADWNGVLISTELLIES
CCCCCEEEEEEEEECCCCCCCCEEEECCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA