Click here to switch to the map view.

The map label for this gene is secB

Identifier: 218708269

GI number: 218708269

Start: 200156

End: 200623

Strand: Reverse

Name: secB

Synonym: VS_0206

Alternate gene names: 218708269

Gene position: 200623-200156 (Counterclockwise)

Preceding gene: 218708270

Following gene: 218708268

Centisome position: 6.08

GC content: 45.94

Gene sequence:

>468_bases
ATGGCTGAAGCAGCACAACAAGACGCACAACAGAACTTCGCAATCCAACGTATCTTCCTAAAAGACGTATCTTTCGAAGC
GCCAAACTCTCCAGACATGTTTCAAAAAGAGTGGAACCCAGATGTAAAACTGGACCTAGACACTCAAAGTCGTGAACTTG
GCGAAGGCGTGTACGAAGTAATCCTACGTCTAACGGTTACGGTTAAAAACGCAGAAGACACTGCATTCCTTTGTGAAGTT
CAACAAGGCGGCATCTTCTCTGCAAGCGAAATGGAAGCTGGCCAACTCGCTCATTGCCTAGGTGCATTCTGCCCGAACAT
CCTGTTCCCATACGCTCGTGAAACAATTTCTAGCCTAGTGGTTAAAGGTACGTTCCCACAACTGAACCTAGCGCCAGTTA
ACTTTGATGCTTTGTTCATGAACTACCTACAAAACCAAGCTCAACAAGCTGAAGGCGAACAAGCTTAA

Upstream 100 bases:

>100_bases
GTTAAAGGTAAGCTGACCTAACTAAACGAATATGACTTTAAGGTTTTGTTCAACAGAGATGGCGAACGAAACCTAATTAT
AAATTTTTAAGGACAAGAAA

Downstream 100 bases:

>100_bases
GTCTCAAAGTAGAGCTTAACTCTAACGATTCAAGCGCTAGTTAGCTTTTAAATGCACATCGCAACTTCTGCGATGTGCAT
TTTTTCTTTACACTGTACTA

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MAEAAQQDAQQNFAIQRIFLKDVSFEAPNSPDMFQKEWNPDVKLDLDTQSRELGEGVYEVILRLTVTVKNAEDTAFLCEV
QQGGIFSASEMEAGQLAHCLGAFCPNILFPYARETISSLVVKGTFPQLNLAPVNFDALFMNYLQNQAQQAEGEQA

Sequences:

>Translated_155_residues
MAEAAQQDAQQNFAIQRIFLKDVSFEAPNSPDMFQKEWNPDVKLDLDTQSRELGEGVYEVILRLTVTVKNAEDTAFLCEV
QQGGIFSASEMEAGQLAHCLGAFCPNILFPYARETISSLVVKGTFPQLNLAPVNFDALFMNYLQNQAQQAEGEQA
>Mature_154_residues
AEAAQQDAQQNFAIQRIFLKDVSFEAPNSPDMFQKEWNPDVKLDLDTQSRELGEGVYEVILRLTVTVKNAEDTAFLCEVQ
QGGIFSASEMEAGQLAHCLGAFCPNILFPYARETISSLVVKGTFPQLNLAPVNFDALFMNYLQNQAQQAEGEQA

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=149, Percent_Identity=67.1140939597315, Blast_Score=221, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_VIBSL (B7VHM6)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002415890.1
- ProteinModelPortal:   B7VHM6
- SMR:   B7VHM6
- GeneID:   7162744
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_0206
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- ProtClustDB:   PRK05751
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17226; Mature: 17094

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEAAQQDAQQNFAIQRIFLKDVSFEAPNSPDMFQKEWNPDVKLDLDTQSRELGEGVYEV
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEECCHHHHHHHHHHHH
ILRLTVTVKNAEDTAFLCEVQQGGIFSASEMEAGQLAHCLGAFCPNILFPYARETISSLV
HHHHHHEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKGTFPQLNLAPVNFDALFMNYLQNQAQQAEGEQA
HCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AEAAQQDAQQNFAIQRIFLKDVSFEAPNSPDMFQKEWNPDVKLDLDTQSRELGEGVYEV
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEECCHHHHHHHHHHHH
ILRLTVTVKNAEDTAFLCEVQQGGIFSASEMEAGQLAHCLGAFCPNILFPYARETISSLV
HHHHHHEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKGTFPQLNLAPVNFDALFMNYLQNQAQQAEGEQA
HCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA