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The map label for this gene is slmA [H]

Identifier: 218708243

GI number: 218708243

Start: 177158

End: 177748

Strand: Reverse

Name: slmA [H]

Synonym: VS_0180

Alternate gene names: 218708243

Gene position: 177748-177158 (Counterclockwise)

Preceding gene: 218708244

Following gene: 218708242

Centisome position: 5.39

GC content: 44.33

Gene sequence:

>591_bases
ATGGCCGGTACTCGAAAATCAAACCGTCGTGAAGAAATCCTGCAAGCTCTAGCACAAATGTTGGAATCGACCGAAGGTGC
TTCTCGTATCACAACGGTAAAGTTGGCCAAGCAAGTTGGTGTTTCTGAAGCTGCGTTATACCGCCACTTCCCAAGCAAAG
CTCGCATGTTTGAAGGCTTGATCGAGTTCATTGAAGAAGCGTTGATGTCTCGAATCAACCGTATTCTAGATGAAGAGAAA
GACACACTAGAGCGCATACGCCTAGTGCTACAACTTATCTTGGTTTTCTCAGAACGTAACCCAGGCCTGACTCGAATTTT
GTCTGGTCATGCTCTAATGTTTGAAAATGAACGCCTGCGCGATCGCATCAATCAGCTTTTCGAACGTATTGAGACGCAAC
TTCGTCAAATTCTACGAGAAAGAAAGCTTCGCGAAGGGAAGTCATTCCCGGTTGATGAAAAAATCTTAGCGGCTCAATTG
TTAGGTCAGGTTGAAGGAAGTTTAAATCGATTTGTTCGCTCGGACTTCAAATATCAACCGACAGAAAACTTTGATGCTTA
TTGGGCTCTACTCAGCGCTCAGATTAAGTAA

Upstream 100 bases:

>100_bases
GATTCTGTTGACCTAGGTCTTACAAAACTAGGAACAGAATTGAATGGTGTTTATAATCCTGCTTCACTCAATCCTCATCT
TTAGGAAAGGAAGTAAATAG

Downstream 100 bases:

>100_bases
ACTCAATATCTTAAGTGATGGTTATGACGACGAAAAACTCTCCTGCAAGTAGCACGGTACAACACGTTATTAATAAGCCA
CCTTTTACCCTAGCACTACT

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MAGTRKSNRREEILQALAQMLESTEGASRITTVKLAKQVGVSEAALYRHFPSKARMFEGLIEFIEEALMSRINRILDEEK
DTLERIRLVLQLILVFSERNPGLTRILSGHALMFENERLRDRINQLFERIETQLRQILRERKLREGKSFPVDEKILAAQL
LGQVEGSLNRFVRSDFKYQPTENFDAYWALLSAQIK

Sequences:

>Translated_196_residues
MAGTRKSNRREEILQALAQMLESTEGASRITTVKLAKQVGVSEAALYRHFPSKARMFEGLIEFIEEALMSRINRILDEEK
DTLERIRLVLQLILVFSERNPGLTRILSGHALMFENERLRDRINQLFERIETQLRQILRERKLREGKSFPVDEKILAAQL
LGQVEGSLNRFVRSDFKYQPTENFDAYWALLSAQIK
>Mature_195_residues
AGTRKSNRREEILQALAQMLESTEGASRITTVKLAKQVGVSEAALYRHFPSKARMFEGLIEFIEEALMSRINRILDEEKD
TLERIRLVLQLILVFSERNPGLTRILSGHALMFENERLRDRINQLFERIETQLRQILRERKLREGKSFPVDEKILAAQLL
GQVEGSLNRFVRSDFKYQPTENFDAYWALLSAQIK

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=193, Percent_Identity=66.839378238342, Blast_Score=258, Evalue=2e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22808; Mature: 22677

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGTRKSNRREEILQALAQMLESTEGASRITTVKLAKQVGVSEAALYRHFPSKARMFEGL
CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHH
IEFIEEALMSRINRILDEEKDTLERIRLVLQLILVFSERNPGLTRILSGHALMFENERLR
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHEECCHHHH
DRINQLFERIETQLRQILRERKLREGKSFPVDEKILAAQLLGQVEGSLNRFVRSDFKYQP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TENFDAYWALLSAQIK
CCCHHHHHHHHHHHCC
>Mature Secondary Structure 
AGTRKSNRREEILQALAQMLESTEGASRITTVKLAKQVGVSEAALYRHFPSKARMFEGL
CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHH
IEFIEEALMSRINRILDEEKDTLERIRLVLQLILVFSERNPGLTRILSGHALMFENERLR
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHEECCHHHH
DRINQLFERIETQLRQILRERKLREGKSFPVDEKILAAQLLGQVEGSLNRFVRSDFKYQP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TENFDAYWALLSAQIK
CCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]