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The map label for this gene is yicC [H]

Identifier: 218708239

GI number: 218708239

Start: 173297

End: 174364

Strand: Reverse

Name: yicC [H]

Synonym: VS_0176

Alternate gene names: 218708239

Gene position: 174364-173297 (Counterclockwise)

Preceding gene: 218708242

Following gene: 218708236

Centisome position: 5.28

GC content: 45.22

Gene sequence:

>1068_bases
TTGGGGCAAGATTATATAGCAGTTTATCTTTCAAATCTATTTACCATTCAAAGTGGCCTACTACTTAAGGCGACTTACGC
CTCAAAGATACTTACCGTGAAGGCTATTTATAACGGAAAATCGACAAGCTTCGGGAGCACACCATATCGTGATACTATGC
GTGCGCGTTATTTTCAGAATGATAAAAGACAGGAAAATTCGATGATTTATAGTATGACCGCGTACGCGCGCAAAGAAGTA
AAAGGCGATTGGGGTACAGCAGTATGGGAAATCCGTAGTGTAAACCAACGCTACCTAGAAACTTACTTCCGTATGCCTGA
ACAGTTCCGTGGTTTAGAGCCAATCCTACGCGAGCGTTTCCGTAAGCGTCTAGCTCGCGGCAAGGTTGAATGTAACCTAC
GTTTTGAAGCAAACCCAGCAGCGAAAGGCGAGCTAAGCATTAACGAAGGTTTGGCTCAGCAAGTAATCAATGCTGCTAAC
CAAGTAATGACGATGGCAGGTGAAGACAGCCGTTTGAACCCATTCCAAATCATGAACTGGCCTGGCGTAATGGAAACGCC
AGAGCAAGACATGGATGCCATCAACAAAGATCTACTTGAAGCATTCAACGATGCAATCGCAGAGTTCATTGACGCTCGTG
CTCGTGAAGGCGAAAACATGAAAGCGCTCATCGTTCAGCGTTTAGATGCAATCACTGAAGAAGTCGTTAAAGTTCGTGCA
CGCATGCCTGAGATCCTAGAATGGCAACGTGAGCGTCTTCTTACCAAATTTGAAGATGCGAAGATTGAACTTGAAGGTTC
TCGCGTTGAGCAAGAGCTTATCCTACTGGCTCAGAAGTCAGACGTAGCAGAAGAACTAGACCGCCTAGACTCTCACGTGA
AAGAAGCGAATGTAGTATTGAAGAAAGGTGGCGCTTGTGGCCGTAAACTTGACTTCATGATGCAAGAGTTCAACCGTGAA
TCAAACACGCTAGCATCTAAGTCTATCAGCACAGACATCACAGCATCGGGCGTTGAGCTTAAAGTTCTTATCGAACAGAT
GCGTGAGCAGATCCAGAACATTGAATAA

Upstream 100 bases:

>100_bases
CGCGGTCATTTGGACGCATTGGTATCTACCTTATTAACAGTCTGAAGTGATTTACTATCGAAAGAGTGCATCACCTAAGA
AAGGGGTGAGACAGTTTTGA

Downstream 100 bases:

>100_bases
TAGTTCGTCAGTAACACACTCTGGATAGCCACTAGCTGAATCAGTGTTGATTAGATCAAGATAAGCTCCTAGTTTTAGGG
GCTTTTTTTATGGATACAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MGQDYIAVYLSNLFTIQSGLLLKATYASKILTVKAIYNGKSTSFGSTPYRDTMRARYFQNDKRQENSMIYSMTAYARKEV
KGDWGTAVWEIRSVNQRYLETYFRMPEQFRGLEPILRERFRKRLARGKVECNLRFEANPAAKGELSINEGLAQQVINAAN
QVMTMAGEDSRLNPFQIMNWPGVMETPEQDMDAINKDLLEAFNDAIAEFIDARAREGENMKALIVQRLDAITEEVVKVRA
RMPEILEWQRERLLTKFEDAKIELEGSRVEQELILLAQKSDVAEELDRLDSHVKEANVVLKKGGACGRKLDFMMQEFNRE
SNTLASKSISTDITASGVELKVLIEQMREQIQNIE

Sequences:

>Translated_355_residues
MGQDYIAVYLSNLFTIQSGLLLKATYASKILTVKAIYNGKSTSFGSTPYRDTMRARYFQNDKRQENSMIYSMTAYARKEV
KGDWGTAVWEIRSVNQRYLETYFRMPEQFRGLEPILRERFRKRLARGKVECNLRFEANPAAKGELSINEGLAQQVINAAN
QVMTMAGEDSRLNPFQIMNWPGVMETPEQDMDAINKDLLEAFNDAIAEFIDARAREGENMKALIVQRLDAITEEVVKVRA
RMPEILEWQRERLLTKFEDAKIELEGSRVEQELILLAQKSDVAEELDRLDSHVKEANVVLKKGGACGRKLDFMMQEFNRE
SNTLASKSISTDITASGVELKVLIEQMREQIQNIE
>Mature_354_residues
GQDYIAVYLSNLFTIQSGLLLKATYASKILTVKAIYNGKSTSFGSTPYRDTMRARYFQNDKRQENSMIYSMTAYARKEVK
GDWGTAVWEIRSVNQRYLETYFRMPEQFRGLEPILRERFRKRLARGKVECNLRFEANPAAKGELSINEGLAQQVINAANQ
VMTMAGEDSRLNPFQIMNWPGVMETPEQDMDAINKDLLEAFNDAIAEFIDARAREGENMKALIVQRLDAITEEVVKVRAR
MPEILEWQRERLLTKFEDAKIELEGSRVEQELILLAQKSDVAEELDRLDSHVKEANVVLKKGGACGRKLDFMMQEFNRES
NTLASKSISTDITASGVELKVLIEQMREQIQNIE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family [H]

Homologues:

Organism=Escherichia coli, GI1790075, Length=288, Percent_Identity=64.9305555555556, Blast_Score=382, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527 [H]

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]

EC number: NA

Molecular weight: Translated: 40706; Mature: 40575

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQDYIAVYLSNLFTIQSGLLLKATYASKILTVKAIYNGKSTSFGSTPYRDTMRARYFQN
CCCHHHHHHHHHHHHHHCCCEEEEHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHC
DKRQENSMIYSMTAYARKEVKGDWGTAVWEIRSVNQRYLETYFRMPEQFRGLEPILRERF
HHHHHCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHH
RKRLARGKVECNLRFEANPAAKGELSINEGLAQQVINAANQVMTMAGEDSRLNPFQIMNW
HHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC
PGVMETPEQDMDAINKDLLEAFNDAIAEFIDARAREGENMKALIVQRLDAITEEVVKVRA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
RMPEILEWQRERLLTKFEDAKIELEGSRVEQELILLAQKSDVAEELDRLDSHVKEANVVL
HCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKGGACGRKLDFMMQEFNRESNTLASKSISTDITASGVELKVLIEQMREQIQNIE
CCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GQDYIAVYLSNLFTIQSGLLLKATYASKILTVKAIYNGKSTSFGSTPYRDTMRARYFQN
CCHHHHHHHHHHHHHHCCCEEEEHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHC
DKRQENSMIYSMTAYARKEVKGDWGTAVWEIRSVNQRYLETYFRMPEQFRGLEPILRERF
HHHHHCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHH
RKRLARGKVECNLRFEANPAAKGELSINEGLAQQVINAANQVMTMAGEDSRLNPFQIMNW
HHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC
PGVMETPEQDMDAINKDLLEAFNDAIAEFIDARAREGENMKALIVQRLDAITEEVVKVRA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
RMPEILEWQRERLLTKFEDAKIELEGSRVEQELILLAQKSDVAEELDRLDSHVKEANVVL
HCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKGGACGRKLDFMMQEFNRESNTLASKSISTDITASGVELKVLIEQMREQIQNIE
CCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2664418; 7686882; 9278503; 1925027 [H]