| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is pbuG [H]
Identifier: 218708225
GI number: 218708225
Start: 157348
End: 158718
Strand: Direct
Name: pbuG [H]
Synonym: VS_0162
Alternate gene names: 218708225
Gene position: 157348-158718 (Clockwise)
Preceding gene: 218708220
Following gene: 218708226
Centisome position: 4.77
GC content: 46.1
Gene sequence:
>1371_bases GTGAATACCGACTCCACCCTGAAAGCCCAGAAGGCATCTGGCTCACTTGACACCCTGTTCAAACTCTCAGAGAGAAAGAC CACGATCAGCACTGAGCTATACGCAGGTTTTATTACCTTCTTAGCGATGAGTTATATCTTGGCGGTTAACCCAGCAATTT TGGGTGGCATTCCGGGAATGGACAAAGGTGCAGTCTTTACGGCGACCGCTCTTTCTGCTGCTATTGCAACGCTTATCATG GGCATTTGGGGTAACTATCCAGTCATGCTAGCACCTGGCATGAGCATGAATGGCTTCTTCAAAGGTTTATTGTTAAGTGG TTCAGTGGCGGTACTTTGGAATGAAGCATTATTTGGCATCTTCCTATCGGGTATTCTTTATCTTGCCTTCTCATTGACTA ATATCCGTAAGTCGATGATTGAATCGATTCCTGAAGATTTGAAGCTGGCGATTACTGTGTCTCTCGGCTTGTTCATTGCT TTCTTAGGCCTTAAGAATGCGGGTATCATCGTTTCTAACCCGTTCGTACTGGTTGGTTTAGGTGACATTTCCGATCCAAA AGTGATCATTGCTTATGTGAGCATCTTCATCGCATTGGGCTGTATGATTCGTGATATTAAGTTGGCCACGTTTATCTCGT TTGTTTCAGCTATCGTGTTGACCATTCTTGCTGATGTATTCATGGGCACATCAAACGCCCCAATCCCTGACCAATTCGTT TCAATGCCACCAAGTATGGCAGGCAGCTTTGGCGCTATCTTTGACTTCTCAGCTTTTACGCCTGAGAAAATGTTCGATTT GTTGTTCATCGTACTTATCTTCTTGATTGTCGATTTCTTCGATGGATTGAGCACGATTGTGGGTGTTGGCCGTGATGCAG GTATCATCGACAAAGACGGTAAAGTGCCGAATGCAAAATCGGCGCTAGTGGCTGATGCGGGCGGTACTGTGATTGGTTCA ATTCTAGGTACCACATCGATTACTGCTTTCTCTGAATCGGGTATTGCCTCTTCTCAAGGTGCGAAAACAGGTTTAGCGGC AGTCATGGTGGCTGGCTTATTCCTAGTGTCTCTATTCCTATACCCAATCTTCTCTATCTTCTCAGCGGCAATGGTCGCGC CTGCGATGGTTGTGGTAGGCATCTACATGGTGGGTCGTCTTGGTCAGATTAACTGGGAAAAGAAAGAGTCACGCATTGCA GCTTTCTTCACCATCATGTTCACAGTGCTAAGCTTCTCACCAGCGAACGGTATGGCGATGGGTTTCATCAGCTACGCATT CACAATGGTTGTTGCAGGTAAGCGCAAAGAAGTGCACCCATTGATCTACGGGCTGTGTGTGGTGTTCTTAACGTACCTGA TTCTGTTGTAA
Upstream 100 bases:
>100_bases ACCGAGCCTACCTTGGTGACTACAGTTTTTAGTGTAGAGATCCCTCTATTCTCACAGCATTTGAATCTCAAATTTCTTAA TTTAATACATAGGTTTTGTT
Downstream 100 bases:
>100_bases GGTTAGTTAGCCACTAGAAAGTGGCTAAGTAAAAAAACAAGTCGATGGCTCTGCAGTGAATGTGGGGCCATTTTTGTATT CGTCGCTTCTCTAGAGCGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 456; Mature: 456
Protein sequence:
>456_residues MNTDSTLKAQKASGSLDTLFKLSERKTTISTELYAGFITFLAMSYILAVNPAILGGIPGMDKGAVFTATALSAAIATLIM GIWGNYPVMLAPGMSMNGFFKGLLLSGSVAVLWNEALFGIFLSGILYLAFSLTNIRKSMIESIPEDLKLAITVSLGLFIA FLGLKNAGIIVSNPFVLVGLGDISDPKVIIAYVSIFIALGCMIRDIKLATFISFVSAIVLTILADVFMGTSNAPIPDQFV SMPPSMAGSFGAIFDFSAFTPEKMFDLLFIVLIFLIVDFFDGLSTIVGVGRDAGIIDKDGKVPNAKSALVADAGGTVIGS ILGTTSITAFSESGIASSQGAKTGLAAVMVAGLFLVSLFLYPIFSIFSAAMVAPAMVVVGIYMVGRLGQINWEKKESRIA AFFTIMFTVLSFSPANGMAMGFISYAFTMVVAGKRKEVHPLIYGLCVVFLTYLILL
Sequences:
>Translated_456_residues MNTDSTLKAQKASGSLDTLFKLSERKTTISTELYAGFITFLAMSYILAVNPAILGGIPGMDKGAVFTATALSAAIATLIM GIWGNYPVMLAPGMSMNGFFKGLLLSGSVAVLWNEALFGIFLSGILYLAFSLTNIRKSMIESIPEDLKLAITVSLGLFIA FLGLKNAGIIVSNPFVLVGLGDISDPKVIIAYVSIFIALGCMIRDIKLATFISFVSAIVLTILADVFMGTSNAPIPDQFV SMPPSMAGSFGAIFDFSAFTPEKMFDLLFIVLIFLIVDFFDGLSTIVGVGRDAGIIDKDGKVPNAKSALVADAGGTVIGS ILGTTSITAFSESGIASSQGAKTGLAAVMVAGLFLVSLFLYPIFSIFSAAMVAPAMVVVGIYMVGRLGQINWEKKESRIA AFFTIMFTVLSFSPANGMAMGFISYAFTMVVAGKRKEVHPLIYGLCVVFLTYLILL >Mature_456_residues MNTDSTLKAQKASGSLDTLFKLSERKTTISTELYAGFITFLAMSYILAVNPAILGGIPGMDKGAVFTATALSAAIATLIM GIWGNYPVMLAPGMSMNGFFKGLLLSGSVAVLWNEALFGIFLSGILYLAFSLTNIRKSMIESIPEDLKLAITVSLGLFIA FLGLKNAGIIVSNPFVLVGLGDISDPKVIIAYVSIFIALGCMIRDIKLATFISFVSAIVLTILADVFMGTSNAPIPDQFV SMPPSMAGSFGAIFDFSAFTPEKMFDLLFIVLIFLIVDFFDGLSTIVGVGRDAGIIDKDGKVPNAKSALVADAGGTVIGS ILGTTSITAFSESGIASSQGAKTGLAAVMVAGLFLVSLFLYPIFSIFSAAMVAPAMVVVGIYMVGRLGQINWEKKESRIA AFFTIMFTVLSFSPANGMAMGFISYAFTMVVAGKRKEVHPLIYGLCVVFLTYLILL
Specific function: Involved in the uptake of the purine bases hypoxanthine and guanine [H]
COG id: COG2252
COG function: function code R; Permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]
Homologues:
Organism=Escherichia coli, GI87082309, Length=456, Percent_Identity=37.0614035087719, Blast_Score=266, Evalue=2e-72, Organism=Escherichia coli, GI1790150, Length=456, Percent_Identity=36.6228070175439, Blast_Score=254, Evalue=1e-68, Organism=Escherichia coli, GI1790499, Length=440, Percent_Identity=29.0909090909091, Blast_Score=168, Evalue=6e-43, Organism=Escherichia coli, GI48994909, Length=443, Percent_Identity=27.9909706546275, Blast_Score=156, Evalue=3e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006043 [H]
Pfam domain/function: PF00860 Xan_ur_permease [H]
EC number: NA
Molecular weight: Translated: 48270; Mature: 48270
Theoretical pI: Translated: 7.24; Mature: 7.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTDSTLKAQKASGSLDTLFKLSERKTTISTELYAGFITFLAMSYILAVNPAILGGIPGM CCCCCCCHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCC DKGAVFTATALSAAIATLIMGIWGNYPVMLAPGMSMNGFFKGLLLSGSVAVLWNEALFGI CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHH FLSGILYLAFSLTNIRKSMIESIPEDLKLAITVSLGLFIAFLGLKNAGIIVSNPFVLVGL HHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHHHCCCCCEEEECCEEEEEC GDISDPKVIIAYVSIFIALGCMIRDIKLATFISFVSAIVLTILADVFMGTSNAPIPDQFV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH SMPPSMAGSFGAIFDFSAFTPEKMFDLLFIVLIFLIVDFFDGLSTIVGVGRDAGIIDKDG CCCCHHCCCCCHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC KVPNAKSALVADAGGTVIGSILGTTSITAFSESGIASSQGAKTGLAAVMVAGLFLVSLFL CCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH YPIFSIFSAAMVAPAMVVVGIYMVGRLGQINWEKKESRIAAFFTIMFTVLSFSPANGMAM HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH GFISYAFTMVVAGKRKEVHPLIYGLCVVFLTYLILL HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MNTDSTLKAQKASGSLDTLFKLSERKTTISTELYAGFITFLAMSYILAVNPAILGGIPGM CCCCCCCHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCC DKGAVFTATALSAAIATLIMGIWGNYPVMLAPGMSMNGFFKGLLLSGSVAVLWNEALFGI CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHH FLSGILYLAFSLTNIRKSMIESIPEDLKLAITVSLGLFIAFLGLKNAGIIVSNPFVLVGL HHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHHHCCCCCEEEECCEEEEEC GDISDPKVIIAYVSIFIALGCMIRDIKLATFISFVSAIVLTILADVFMGTSNAPIPDQFV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH SMPPSMAGSFGAIFDFSAFTPEKMFDLLFIVLIFLIVDFFDGLSTIVGVGRDAGIIDKDG CCCCHHCCCCCHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC KVPNAKSALVADAGGTVIGSILGTTSITAFSESGIASSQGAKTGLAAVMVAGLFLVSLFL CCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH YPIFSIFSAAMVAPAMVVVGIYMVGRLGQINWEKKESRIAAFFTIMFTVLSFSPANGMAM HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH GFISYAFTMVVAGKRKEVHPLIYGLCVVFLTYLILL HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969499; 9384377; 11591660 [H]