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The map label for this gene is hslR [H]

Identifier: 218708197

GI number: 218708197

Start: 127665

End: 128051

Strand: Reverse

Name: hslR [H]

Synonym: VS_0133

Alternate gene names: 218708197

Gene position: 128051-127665 (Counterclockwise)

Preceding gene: 218708210

Following gene: 218708196

Centisome position: 3.88

GC content: 46.25

Gene sequence:

>387_bases
ATGAAAACTACTAATGAAGCTGTCAGACTCGATAAATGGTTGTGGGCAGCTCGTTTTTACAAAACCCGGTCGATTGCTCG
CAATATGGTCGATGGTGGCAAAGTCCACTATAATGGTCAGCGCAGCAAGCCAAGTAAAATTGTCGAACTTGGAGCAGTGA
TTACCCTGCGCCAAGGTAATGAAGAAAAGACGGTGACAATCGAGAAAATCTCGGCCCATCGTGGTGGAGCTCCTATAGCT
CAAACCCTCTATGAAGAAACCACCGAGAGCTTGGCAAAGAGAGAAGAGTTTGCAACACAACGTAAACTGAACGCTCATAG
CCCAGCACCAGAACGTCGCCCAGATAAAAAGCAACGTCGTGACATCATCAAGTTCAAGACTCAATAA

Upstream 100 bases:

>100_bases
TCCACTTTAAGCTTCTACTTAATGTAATTAAAAGCATGTTGCGCACTGTCCATTACAGTTAAACCGCATTCATTTCTCAC
TTAATAAGGCGCAGCCCTAT

Downstream 100 bases:

>100_bases
GCTAGAAGGAATAGCCAAATGGCCAACCCAATGTCTACAAGTAATGTTTTAAATCGCTACCTATTTGAAGACCTATCAGT
TCGTGGTGAATTGGTACAGA

Product: hypothetical protein

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MKTTNEAVRLDKWLWAARFYKTRSIARNMVDGGKVHYNGQRSKPSKIVELGAVITLRQGNEEKTVTIEKISAHRGGAPIA
QTLYEETTESLAKREEFATQRKLNAHSPAPERRPDKKQRRDIIKFKTQ

Sequences:

>Translated_128_residues
MKTTNEAVRLDKWLWAARFYKTRSIARNMVDGGKVHYNGQRSKPSKIVELGAVITLRQGNEEKTVTIEKISAHRGGAPIA
QTLYEETTESLAKREEFATQRKLNAHSPAPERRPDKKQRRDIIKFKTQ
>Mature_128_residues
MKTTNEAVRLDKWLWAARFYKTRSIARNMVDGGKVHYNGQRSKPSKIVELGAVITLRQGNEEKTVTIEKISAHRGGAPIA
QTLYEETTESLAKREEFATQRKLNAHSPAPERRPDKKQRRDIIKFKTQ

Specific function: Involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=120, Percent_Identity=67.5, Blast_Score=170, Evalue=3e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 14705; Mature: 14705

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTTNEAVRLDKWLWAARFYKTRSIARNMVDGGKVHYNGQRSKPSKIVELGAVITLRQGN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHEEEEECCC
EEKTVTIEKISAHRGGAPIAQTLYEETTESLAKREEFATQRKLNAHSPAPERRPDKKQRR
CCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
DIIKFKTQ
HHHHCCCC
>Mature Secondary Structure
MKTTNEAVRLDKWLWAARFYKTRSIARNMVDGGKVHYNGQRSKPSKIVELGAVITLRQGN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHEEEEECCC
EEKTVTIEKISAHRGGAPIAQTLYEETTESLAKREEFATQRKLNAHSPAPERRPDKKQRR
CCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
DIIKFKTQ
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]