Click here to switch to the map view.

The map label for this gene is yicH [H]

Identifier: 218708194

GI number: 218708194

Start: 122782

End: 124635

Strand: Reverse

Name: yicH [H]

Synonym: VS_0130

Alternate gene names: 218708194

Gene position: 124635-122782 (Counterclockwise)

Preceding gene: 218708195

Following gene: 218708193

Centisome position: 3.78

GC content: 45.95

Gene sequence:

>1854_bases
ATGAAAAAGGTATTCATGGTGTTCGGCATTGCGCTGGCTATCGCCGTTGCAACTATCGCAGCATTGCTATTAAGCCTACA
AACCCAATACCGTACGGATATTACTAACTTTTTTATCAAACATGCGATTGAACAACGTGTGCTCATTGAAGATGTTGAGT
ACCAGGCGCCTTATCACATCACCTTAATGGGCATTACCCAAAGCCAACCTGAAAAACAAACACCGCTGTATATCGACAAG
ATTGACCTTTGGTTCAGCTCAGACTCTATTCTTGAAACTAAGCTGGTTTTGGACTCTGTATTGATCAGCGGACTGCAGTT
AGAAGCCAACGATCTAGACACAGTCACATCAGTGTTTACCCAACCAAACCTCAAGCTCCGTCAGCTAGCGATCAATAATC
TAGATTTCTCGACTCCAAACTTTAATGCGCGAGGCATCGACCTTCAGATCTCCGACCCAACGTGGAACAACGACAACTCA
CTTCTACCTTATGGAAAAACCCAACTTTCTGCCTCACAGCTGTATTGGCAAAGCGAAGCGTTCGATAACCTGTTGATTGA
CCTAGATCTTAAACCAAGTGATAGCACCCTGTATGGCGCTTCGTTTGACTGGCGTGGTGCCAAAATTTCTGGTCAAGCAG
AGCAGTATCAGCAAGATTGGTCGTTGGTGAATGTGACCGTCGATGGCTTACGACTCAATCAGAAACAGACCCAAAGCCTA
CTAAGCAAAGAGTGGGATGTAGCAGGCATTCAGATCAATCACATCAATAGCTTAGATATTCTGCGTAGCGATGTAGAGTG
GCAAGACGGCCACCTCGCAGCTTTTGATGCCTCACTAGAAAATATCCAACTGCCTTTTGAGCTGTGGAAGCAACAGAAAG
CCATGTTCTCTCTGCAAGCAGAGGGAGTGACCATTGATGAAGACATGTTCATAGAGCCAAGTATCAAGCTCAACTTAGAT
CCGAACCAGATTCTGATTGAAGACTTCTATACTCAATTCCTACAAGGCACTGTTCAACTGAATGGCAAAGTAACCCCTAA
CAGCATTCAATTAGCGCAGCTCGACCTGCAAGGTATAAAGTGGATTACGGAAAGCCAAGATAGCCCTCTACCCGCCACTC
GCTTGATACCTTGGCTCACGCAGCTCCAGAATGTCGAAATTAGCCGAATTAACATAGAACGCAGCCAACTTATCCAACTC
GCACAAAAGCCTTACTGGCAGGTCTCAGGATTACATATCGAGGGGTATCAAGTTCAACTTCTACAAGATAGAAAGCTAGG
TCTGTGGCAAGGAAAGCTGATGGCCAGCGCGAATGATGCCAGCTACCAAAACATTATTAGCGCTCAACCAGTGGTTGAGA
TGAATAGCGAGCAAGGAAAATGGACGCTGACACGCCTGTTTATGCCACTAAAGCATGGCTATGTTGAAGCCAATGCGACA
CTCGATTTTAACCAAATCAGCAAGCCATGGAGCATAGAGATCTCTGCCGATGGATTACCGATAGCACCCATGTTACAGCA
ACTTGAACTACCGCTCGACGCAACCGGTTATGGCGAGTTTGAACTTCAAGCTGCAGGTTTATACGGCGATTCATTAATGC
TCGGCTATTCCACAACAGGTCAACTCACTGGTAGCGTTCGTCAAGGTGTGATGACCTTTAATGACAAGCTTTCTGAAACA
TCGACTGATAACGTATTTGAAATCCCAGAGCTCAATGCAAATTTTGACCGTGGACGCTTCACACTCGAACCAGCGCACAT
TATTGGTGCATCGGCAGCAGAGCAAGGCGAACAAAGGATTCAAACGTTAAATGGCGAAATGTCATGGGCGAGTCTGGGGA
GCTCGACTTGCTAA

Upstream 100 bases:

>100_bases
TTTTGTAGCAAGCCCCTCTTTTGAGGGGCTTTTTTGTTGCTGCTTGTCCCTTTTTGTTCCACTCTGTTTTGAGACGATTG
AAATTTAAGGCTTTCAGGGA

Downstream 100 bases:

>100_bases
AAGCAGAGCAACACACTCTCTCTATTTCACTATCCGACCCATGCCACCAAATATCAGGAAAGCTCACCCAAGCTGAGTAT
TCCGAGATTAACGACTGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 617; Mature: 617

Protein sequence:

>617_residues
MKKVFMVFGIALAIAVATIAALLLSLQTQYRTDITNFFIKHAIEQRVLIEDVEYQAPYHITLMGITQSQPEKQTPLYIDK
IDLWFSSDSILETKLVLDSVLISGLQLEANDLDTVTSVFTQPNLKLRQLAINNLDFSTPNFNARGIDLQISDPTWNNDNS
LLPYGKTQLSASQLYWQSEAFDNLLIDLDLKPSDSTLYGASFDWRGAKISGQAEQYQQDWSLVNVTVDGLRLNQKQTQSL
LSKEWDVAGIQINHINSLDILRSDVEWQDGHLAAFDASLENIQLPFELWKQQKAMFSLQAEGVTIDEDMFIEPSIKLNLD
PNQILIEDFYTQFLQGTVQLNGKVTPNSIQLAQLDLQGIKWITESQDSPLPATRLIPWLTQLQNVEISRINIERSQLIQL
AQKPYWQVSGLHIEGYQVQLLQDRKLGLWQGKLMASANDASYQNIISAQPVVEMNSEQGKWTLTRLFMPLKHGYVEANAT
LDFNQISKPWSIEISADGLPIAPMLQQLELPLDATGYGEFELQAAGLYGDSLMLGYSTTGQLTGSVRQGVMTFNDKLSET
STDNVFEIPELNANFDRGRFTLEPAHIIGASAAEQGEQRIQTLNGEMSWASLGSSTC

Sequences:

>Translated_617_residues
MKKVFMVFGIALAIAVATIAALLLSLQTQYRTDITNFFIKHAIEQRVLIEDVEYQAPYHITLMGITQSQPEKQTPLYIDK
IDLWFSSDSILETKLVLDSVLISGLQLEANDLDTVTSVFTQPNLKLRQLAINNLDFSTPNFNARGIDLQISDPTWNNDNS
LLPYGKTQLSASQLYWQSEAFDNLLIDLDLKPSDSTLYGASFDWRGAKISGQAEQYQQDWSLVNVTVDGLRLNQKQTQSL
LSKEWDVAGIQINHINSLDILRSDVEWQDGHLAAFDASLENIQLPFELWKQQKAMFSLQAEGVTIDEDMFIEPSIKLNLD
PNQILIEDFYTQFLQGTVQLNGKVTPNSIQLAQLDLQGIKWITESQDSPLPATRLIPWLTQLQNVEISRINIERSQLIQL
AQKPYWQVSGLHIEGYQVQLLQDRKLGLWQGKLMASANDASYQNIISAQPVVEMNSEQGKWTLTRLFMPLKHGYVEANAT
LDFNQISKPWSIEISADGLPIAPMLQQLELPLDATGYGEFELQAAGLYGDSLMLGYSTTGQLTGSVRQGVMTFNDKLSET
STDNVFEIPELNANFDRGRFTLEPAHIIGASAAEQGEQRIQTLNGEMSWASLGSSTC
>Mature_617_residues
MKKVFMVFGIALAIAVATIAALLLSLQTQYRTDITNFFIKHAIEQRVLIEDVEYQAPYHITLMGITQSQPEKQTPLYIDK
IDLWFSSDSILETKLVLDSVLISGLQLEANDLDTVTSVFTQPNLKLRQLAINNLDFSTPNFNARGIDLQISDPTWNNDNS
LLPYGKTQLSASQLYWQSEAFDNLLIDLDLKPSDSTLYGASFDWRGAKISGQAEQYQQDWSLVNVTVDGLRLNQKQTQSL
LSKEWDVAGIQINHINSLDILRSDVEWQDGHLAAFDASLENIQLPFELWKQQKAMFSLQAEGVTIDEDMFIEPSIKLNLD
PNQILIEDFYTQFLQGTVQLNGKVTPNSIQLAQLDLQGIKWITESQDSPLPATRLIPWLTQLQNVEISRINIERSQLIQL
AQKPYWQVSGLHIEGYQVQLLQDRKLGLWQGKLMASANDASYQNIISAQPVVEMNSEQGKWTLTRLFMPLKHGYVEANAT
LDFNQISKPWSIEISADGLPIAPMLQQLELPLDATGYGEFELQAAGLYGDSLMLGYSTTGQLTGSVRQGVMTFNDKLSET
STDNVFEIPELNANFDRGRFTLEPAHIIGASAAEQGEQRIQTLNGEMSWASLGSSTC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790088, Length=537, Percent_Identity=22.3463687150838, Blast_Score=97, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007844 [H]

Pfam domain/function: PF05170 AsmA [H]

EC number: NA

Molecular weight: Translated: 69236; Mature: 69236

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVFMVFGIALAIAVATIAALLLSLQTQYRTDITNFFIKHAIEQRVLIEDVEYQAPYHI
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
TLMGITQSQPEKQTPLYIDKIDLWFSSDSILETKLVLDSVLISGLQLEANDLDTVTSVFT
EEEEECCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHC
QPNLKLRQLAINNLDFSTPNFNARGIDLQISDPTWNNDNSLLPYGKTQLSASQLYWQSEA
CCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHEECHHC
FDNLLIDLDLKPSDSTLYGASFDWRGAKISGQAEQYQQDWSLVNVTVDGLRLNQKQTQSL
CCCEEEEEECCCCCCEEEECCCCCCCCEECCCHHHHHCCCEEEEEEEECEEECHHHHHHH
LSKEWDVAGIQINHINSLDILRSDVEWQDGHLAAFDASLENIQLPFELWKQQKAMFSLQA
HHCCCCEEEEEEECCCCHHHHHCCCCCCCCEEEEEECCCCCEECCHHHHHHHHHHEEEEE
EGVTIDEDMFIEPSIKLNLDPNQILIEDFYTQFLQGTVQLNGKVTPNSIQLAQLDLQGIK
CCEEECCCEEECCCEEEECCCCEEHHHHHHHHHHCEEEEECCEECCCCEEEEEECCCCCE
WITESQDSPLPATRLIPWLTQLQNVEISRINIERSQLIQLAQKPYWQVSGLHIEGYQVQL
EEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEECEEECCEEEEE
LQDRKLGLWQGKLMASANDASYQNIISAQPVVEMNSEQGKWTLTRLFMPLKHGYVEANAT
EECCCCCEECCEEEECCCCCHHHHHHCCCCEEEECCCCCCEEEEHHHHHHHCCEEEECCE
LDFNQISKPWSIEISADGLPIAPMLQQLELPLDATGYGEFELQAAGLYGDSLMLGYSTTG
EEHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC
QLTGSVRQGVMTFNDKLSETSTDNVFEIPELNANFDRGRFTLEPAHIIGASAAEQGEQRI
CCCHHHHHCEEHHCCCCCCCCCCCEEECCCCCCCCCCCEEEECHHHHCCCHHHHHHHHHH
QTLNGEMSWASLGSSTC
HHHCCCCEECCCCCCCC
>Mature Secondary Structure
MKKVFMVFGIALAIAVATIAALLLSLQTQYRTDITNFFIKHAIEQRVLIEDVEYQAPYHI
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
TLMGITQSQPEKQTPLYIDKIDLWFSSDSILETKLVLDSVLISGLQLEANDLDTVTSVFT
EEEEECCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHC
QPNLKLRQLAINNLDFSTPNFNARGIDLQISDPTWNNDNSLLPYGKTQLSASQLYWQSEA
CCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHEECHHC
FDNLLIDLDLKPSDSTLYGASFDWRGAKISGQAEQYQQDWSLVNVTVDGLRLNQKQTQSL
CCCEEEEEECCCCCCEEEECCCCCCCCEECCCHHHHHCCCEEEEEEEECEEECHHHHHHH
LSKEWDVAGIQINHINSLDILRSDVEWQDGHLAAFDASLENIQLPFELWKQQKAMFSLQA
HHCCCCEEEEEEECCCCHHHHHCCCCCCCCEEEEEECCCCCEECCHHHHHHHHHHEEEEE
EGVTIDEDMFIEPSIKLNLDPNQILIEDFYTQFLQGTVQLNGKVTPNSIQLAQLDLQGIK
CCEEECCCEEECCCEEEECCCCEEHHHHHHHHHHCEEEEECCEECCCCEEEEEECCCCCE
WITESQDSPLPATRLIPWLTQLQNVEISRINIERSQLIQLAQKPYWQVSGLHIEGYQVQL
EEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEECEEECCEEEEE
LQDRKLGLWQGKLMASANDASYQNIISAQPVVEMNSEQGKWTLTRLFMPLKHGYVEANAT
EECCCCCEECCEEEECCCCCHHHHHHCCCCEEEECCCCCCEEEEHHHHHHHCCEEEECCE
LDFNQISKPWSIEISADGLPIAPMLQQLELPLDATGYGEFELQAAGLYGDSLMLGYSTTG
EEHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC
QLTGSVRQGVMTFNDKLSETSTDNVFEIPELNANFDRGRFTLEPAHIIGASAAEQGEQRI
CCCHHHHHCEEHHCCCCCCCCCCCEEECCCCCCCCCCCEEEECHHHHCCCHHHHHHHHHH
QTLNGEMSWASLGSSTC
HHHCCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]