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The map label for this gene is rbn [C]

Identifier: 218708190

GI number: 218708190

Start: 120315

End: 121256

Strand: Direct

Name: rbn [C]

Synonym: VS_0126

Alternate gene names: 218708190

Gene position: 120315-121256 (Clockwise)

Preceding gene: 218708187

Following gene: 218708191

Centisome position: 3.65

GC content: 44.9

Gene sequence:

>942_bases
ATGAACGAGTTACCAGGGAGTTACAAGTTGAAGATAAAAAAGGCAGCTACAGGAAGCATCCAGTTTTCCCGCTATCTTCT
TACGCGGATGACGCACGATAGAGTTAATGTGAATGCAGGGTACTTGGCGTACATTACTTTGCTCTCGATCGTACCGATGT
TGACGGTTTTGCTCTCTATTTTGTCGTCATTTTCAGTTTTTGCTGATGTTGGTTTAGTGATTCAAAACTTCGTTATTACC
AACTTTGTTCCCGCTTCCGGGGATGCGGTGCATGGTGCTTTACTGGAGTTTGTTGCCAATACCGGCAAGATGACGGCGGT
GGGTAGTGTGTTCTTATTCATTGCCGCTCTGATGCTGATCTCCAATATTGATAAAAACCTAAACTACATCTGGCGAGTAA
CGGAAAAGCGACGTGCTGTGTTGTCTTTTTCGATGTATTGGATGGTGCTAACTCTTGGGCCTATTTTGATCGGAGCGAGC
ATTGCTGCAACCTCGTATGTGACATCATTAAACTTGTTACAAAACGAAGTCGTGTCGAGTGCTTTTAATACCGTGATTCG
CAAGCTCCCTTTGATTACCTCATTCTTTGCGTTTTTCGGTCTGTATCTGTTGGTTCCCAACAAAAAGATACACTTTTCTC
ATGCGGCAGCTGGCTCTCTAGTGGCGGCTCTGTTGTTCGAACTCAGCAAGAAAGGCTTTGCAGCTTACATTACTCAGTTT
CCGTCTTACCAGTTGATTTATGGCGCATTAGCGGCGATTCCCATTCTTTTTGTTTGGGTCTATTTGTGCTGGTTGATTGT
GTTAGTGGGTGCTGAAGTGACGGCCGCGTTGGGCGAGCAGGAACAGTGGAGTGACTCTCAAGAAATGGTACACTCGTCGG
ATAAAGACAAAATTACAGAGCAAGGAAACAACAGTGATAGCACTGATCCAGAGAGTAAGTGA

Upstream 100 bases:

>100_bases
TACTTATCACAAAACTCTGCCTTGTTCTCAAGCCTTTTTCCTACGCTATTTTTGAACATTTACTTACTGTGATTAATATA
ACGGAATATTAATTAGGACT

Downstream 100 bases:

>100_bases
AGCTGCCGTCCGTGTTGATGGCGAAGTAGTGGGTGAGATTGAGCAAGGCTTATTAGTTCTGTTAGGTGTAGAAAAAGGTG
ATGACGAAGCCAAAGCCAAA

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MNELPGSYKLKIKKAATGSIQFSRYLLTRMTHDRVNVNAGYLAYITLLSIVPMLTVLLSILSSFSVFADVGLVIQNFVIT
NFVPASGDAVHGALLEFVANTGKMTAVGSVFLFIAALMLISNIDKNLNYIWRVTEKRRAVLSFSMYWMVLTLGPILIGAS
IAATSYVTSLNLLQNEVVSSAFNTVIRKLPLITSFFAFFGLYLLVPNKKIHFSHAAAGSLVAALLFELSKKGFAAYITQF
PSYQLIYGALAAIPILFVWVYLCWLIVLVGAEVTAALGEQEQWSDSQEMVHSSDKDKITEQGNNSDSTDPESK

Sequences:

>Translated_313_residues
MNELPGSYKLKIKKAATGSIQFSRYLLTRMTHDRVNVNAGYLAYITLLSIVPMLTVLLSILSSFSVFADVGLVIQNFVIT
NFVPASGDAVHGALLEFVANTGKMTAVGSVFLFIAALMLISNIDKNLNYIWRVTEKRRAVLSFSMYWMVLTLGPILIGAS
IAATSYVTSLNLLQNEVVSSAFNTVIRKLPLITSFFAFFGLYLLVPNKKIHFSHAAAGSLVAALLFELSKKGFAAYITQF
PSYQLIYGALAAIPILFVWVYLCWLIVLVGAEVTAALGEQEQWSDSQEMVHSSDKDKITEQGNNSDSTDPESK
>Mature_313_residues
MNELPGSYKLKIKKAATGSIQFSRYLLTRMTHDRVNVNAGYLAYITLLSIVPMLTVLLSILSSFSVFADVGLVIQNFVIT
NFVPASGDAVHGALLEFVANTGKMTAVGSVFLFIAALMLISNIDKNLNYIWRVTEKRRAVLSFSMYWMVLTLGPILIGAS
IAATSYVTSLNLLQNEVVSSAFNTVIRKLPLITSFFAFFGLYLLVPNKKIHFSHAAAGSLVAALLFELSKKGFAAYITQF
PSYQLIYGALAAIPILFVWVYLCWLIVLVGAEVTAALGEQEQWSDSQEMVHSSDKDKITEQGNNSDSTDPESK

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=271, Percent_Identity=46.1254612546125, Blast_Score=253, Evalue=1e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y126_VIBSL (B7VHE7)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002415811.1
- GeneID:   7159799
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_0126
- HOGENOM:   HBG451793
- OMA:   RTINDIW
- ProtClustDB:   PRK01637
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- PIRSF:   PIRSF035875
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 34377; Mature: 34377

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x18681aac)-; HASH(0x18c395a0)-; HASH(0x18bf2074)-; HASH(0x195f613c)-; HASH(0x18851664)-; HASH(0x19312f68)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELPGSYKLKIKKAATGSIQFSRYLLTRMTHDRVNVNAGYLAYITLLSIVPMLTVLLSI
CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LSSFSVFADVGLVIQNFVITNFVPASGDAVHGALLEFVANTGKMTAVGSVFLFIAALMLI
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
SNIDKNLNYIWRVTEKRRAVLSFSMYWMVLTLGPILIGASIAATSYVTSLNLLQNEVVSS
HHHCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFNTVIRKLPLITSFFAFFGLYLLVPNKKIHFSHAAAGSLVAALLFELSKKGFAAYITQF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHC
PSYQLIYGALAAIPILFVWVYLCWLIVLVGAEVTAALGEQEQWSDSQEMVHSSDKDKITE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHCCCHHHHHH
QGNNSDSTDPESK
CCCCCCCCCCCCH
>Mature Secondary Structure
MNELPGSYKLKIKKAATGSIQFSRYLLTRMTHDRVNVNAGYLAYITLLSIVPMLTVLLSI
CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LSSFSVFADVGLVIQNFVITNFVPASGDAVHGALLEFVANTGKMTAVGSVFLFIAALMLI
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
SNIDKNLNYIWRVTEKRRAVLSFSMYWMVLTLGPILIGASIAATSYVTSLNLLQNEVVSS
HHHCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFNTVIRKLPLITSFFAFFGLYLLVPNKKIHFSHAAAGSLVAALLFELSKKGFAAYITQF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHC
PSYQLIYGALAAIPILFVWVYLCWLIVLVGAEVTAALGEQEQWSDSQEMVHSSDKDKITE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHCCCHHHHHH
QGNNSDSTDPESK
CCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA