Click here to switch to the map view.

The map label for this gene is fimD [H]

Identifier: 218704976

GI number: 218704976

Start: 1786822

End: 1789473

Strand: Reverse

Name: fimD [H]

Synonym: ECUMN_1759

Alternate gene names: 218704976

Gene position: 1789473-1786822 (Counterclockwise)

Preceding gene: 218704977

Following gene: 218704975

Centisome position: 34.4

GC content: 44.42

Gene sequence:

>2652_bases
ATGACAGCCTTTCGTGCCGCATTTAAGGCATATCGTATGCATCAGGTGTTACTACTGCCTCGCTTTGCACGGCTTACCAT
TGCCCTTGGCTTAGCAACTGCGGTATTTCCCGTTGACGCAGAGTATTATTTTAATCCACGGTTTTTAAGCAATGATCTTG
CTGAATCTGTCGATTTATCCGCCTTTACTAAGGGACGCGAGGCACCACCTGGTACATATCGGGTCGACATTTATTTGAAC
GACGAATTTATTACTAGTCGGGATATTACTTTTATTGCAGATGATAATAACGCAGATCTCATCCCATGCCTGAGTACAGA
TCTTCTAGTCAGTCTTGGCATAAAAAAATCAGCGTTATTAGACAATAAAGAACATTCGGCAGAAAAACATGTGCCGGACA
ACAGCGCATGCACACCACTTCAGGATCGTTTGGCCGACGCATCAACTGAGTTTGATGTTGGTCAGCAACATCTGTCACTC
TCCGTTCCGCAAATTTATGTTGGCAGAATGGCTCGCGGCTATGTTTCTCCTGATCTGTGGGAAGAAGGAATAAATGCTGG
GCTTCTAAACTATAGTTTTAATGGTAATTCTATTAATAATCGTAGTAACCATAATGCAGGAAAATCCAACTATGCATATT
TGAATTTACAGAGTGGCATCAACATTGGTAGTTGGCGACTGCGCGATAACTCAACGTGGAGTTATAACAGTGGGAGTAGC
AATTCATCTGACAGCAATAAATGGCAGCATATCAATACGTCGGCTGAACGTGACATTATTCCCTTACGCTCACGCTTAAC
GGTAGGTGATAGTTATACCGATGGCGATATTTTTGATAGTGTGAACTTTCGTGGCCTCAAAATAAATTCAACAGAAGCGA
TGTTGCCCGATAGCCAACATGGTTTCGCTCCGGTGATTCATGGTATTGCCCGCGGCACCGCACAAGTGAGTGTAAAACAG
AATGGATACGATGTTTATCAGACTACTGTCCCACCCGGCCCTTTTACTATTGATGATATCAACTCTGCGGCCAATGGTGG
TGATCTGCAAGTAACCATAAAAGAGGCAGACGGCAGTATTCAGACATTATATGTTCCTTATTCGTCTGTTCCGGTTCTCC
AACGTGCTGGATATACGCGTTATGCGCTTGCCATGGGGGAATATCGTAGTGGAAATAACCTGCAAAGCTCCCCCAAGTTC
ATACAAGGTAGCTTGATGCATGGACTGGAAGGAAACTGGACACCTTATGGCGGAATGCAAATTGCAGAAGATTATCAGGC
CTTCAACCTTGGTATTGGTAAAGATTTAGGACTTTTTGGTGCCTTTTCTTTCGATATCACGCAGGCCAATACGACACTTG
CAGATGGCACCCGTCACAGCGGGCAATCGATTAAATCCGTCTACAGCAAATCCTTCTACCAGACGGGAACCAATATCCAG
GTCGCAGGATATCGCTATTCTACGCAAGGTTTTTATAACTTATCCGACAGTGCCTACAGTCGAATGAGTGGTTACACCGT
CAAGCCTCCTACCGGAGACAGCAACGAGCAGACACAATTTATTGATTATTTTAATCTGTTCTACAGTAAGCGTGGTCAGG
AACAAATAAGCATCTCTCAGCAGCTTGGAAATTACGGTACGACATTTTTTAGTGCCAGTCGCCAAAGTTACTGGAACACG
TCACGCAGCGACCAGCAAATATCATTTGGATTAAATGTGCCGTTTGGTGATATTACGACTTCGCTGAATTACAGCTATTC
CAATAATATATGGCAAAACGATCGGGATCATTTACTTGCTTTTACGCTTAATGTTCCCTTCAGTCATTGGATGCGTACAG
ACAGTCAGTCGGCATTTCGTAATTCAAACGCCAGTTACAGTATGTCAAACGATTTGAAAGGCGGCATGACCAATCTATCG
GGAGTTTATGGCACTCTGCTGCCGGATAATAACCTGAATTATAGTGTTCAGGTCGGTAACACCCACGGGGGTAATACATC
GTCTGGCACCAGTGGTTACAGTTCTCTTAATTATCGTGGAGCTTACGGTAATACGAATGTCGGTTACAGTCGGAGTGGTG
ACAGCAGCCAGATTTATTACGGAATGAGTGGTGGCATTATTGCTCATGCTGATGGCATCACCTTTGGACAGCCGCTGGGC
GACACAATGGTTCTGGTTAAGGCTCCTGGCGCTGATAATGTCAAAATAGAGAACCAGACCGGTATTCATACCGACTGGCG
TGGCTATGCCATATTACCATTTGCGACAGAATATAGAGAAAATCGTGTCGCTCTTAACGCGAATTCCCTTGCAGATAATG
TTGAACTGGATGAAACCGTGGTCACTGTCATCCCAACTCACGGTGCTATTGCCAGAGCAACATTTAATGCACAAATCGGC
GGGAAAGTATTAATGACGTTGAAGTACGGTAATAAGAGCGTTCCATTCGGTGCAATTGTCACTCACGGAAAGAATAAAAA
TGGCAGCATTGTCGCGGAAAACGGTCAGGTTTATCTGACTGGACTTCCACAGTCAGGGAAATTACAGGTTTCATGGGGCA
AAGATAAAAACTCAAACTGTATTGTCGAGTACAAGCTTCCTGAAGTTTCTCCTGGTACCTTACTGAACCAGCAGACAGCA
ATCTGTCGCTAA

Upstream 100 bases:

>100_bases
TTCAGACGATCAATGATTACGGTGCATTAACTCCGCGTATTAAGGCAACCATGCAGTAAGCCAGTGACCTAATTAATAAT
AAACTCAATCGGAATTAATA

Downstream 100 bases:

>100_bases
GGAACAATAGATTATGAAATACAATAACATTATTTTCCTCGGTTTATGTCTGGGGTTAACCACCTATTCTGCTTTATCCG
CAGATAGCGTTATTAAAATT

Product: putative fimbrial outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 883; Mature: 882

Protein sequence:

>883_residues
MTAFRAAFKAYRMHQVLLLPRFARLTIALGLATAVFPVDAEYYFNPRFLSNDLAESVDLSAFTKGREAPPGTYRVDIYLN
DEFITSRDITFIADDNNADLIPCLSTDLLVSLGIKKSALLDNKEHSAEKHVPDNSACTPLQDRLADASTEFDVGQQHLSL
SVPQIYVGRMARGYVSPDLWEEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYLNLQSGINIGSWRLRDNSTWSYNSGSS
NSSDSNKWQHINTSAERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQHGFAPVIHGIARGTAQVSVKQ
NGYDVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSIQTLYVPYSSVPVLQRAGYTRYALAMGEYRSGNNLQSSPKF
IQGSLMHGLEGNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLADGTRHSGQSIKSVYSKSFYQTGTNIQ
VAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDSNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNT
SRSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRNSNASYSMSNDLKGGMTNLS
GVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSSLNYRGAYGNTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLG
DTMVLVKAPGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIG
GKVLMTLKYGNKSVPFGAIVTHGKNKNGSIVAENGQVYLTGLPQSGKLQVSWGKDKNSNCIVEYKLPEVSPGTLLNQQTA
ICR

Sequences:

>Translated_883_residues
MTAFRAAFKAYRMHQVLLLPRFARLTIALGLATAVFPVDAEYYFNPRFLSNDLAESVDLSAFTKGREAPPGTYRVDIYLN
DEFITSRDITFIADDNNADLIPCLSTDLLVSLGIKKSALLDNKEHSAEKHVPDNSACTPLQDRLADASTEFDVGQQHLSL
SVPQIYVGRMARGYVSPDLWEEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYLNLQSGINIGSWRLRDNSTWSYNSGSS
NSSDSNKWQHINTSAERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQHGFAPVIHGIARGTAQVSVKQ
NGYDVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSIQTLYVPYSSVPVLQRAGYTRYALAMGEYRSGNNLQSSPKF
IQGSLMHGLEGNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLADGTRHSGQSIKSVYSKSFYQTGTNIQ
VAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDSNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNT
SRSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRNSNASYSMSNDLKGGMTNLS
GVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSSLNYRGAYGNTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLG
DTMVLVKAPGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIG
GKVLMTLKYGNKSVPFGAIVTHGKNKNGSIVAENGQVYLTGLPQSGKLQVSWGKDKNSNCIVEYKLPEVSPGTLLNQQTA
ICR
>Mature_882_residues
TAFRAAFKAYRMHQVLLLPRFARLTIALGLATAVFPVDAEYYFNPRFLSNDLAESVDLSAFTKGREAPPGTYRVDIYLND
EFITSRDITFIADDNNADLIPCLSTDLLVSLGIKKSALLDNKEHSAEKHVPDNSACTPLQDRLADASTEFDVGQQHLSLS
VPQIYVGRMARGYVSPDLWEEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYLNLQSGINIGSWRLRDNSTWSYNSGSSN
SSDSNKWQHINTSAERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQHGFAPVIHGIARGTAQVSVKQN
GYDVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSIQTLYVPYSSVPVLQRAGYTRYALAMGEYRSGNNLQSSPKFI
QGSLMHGLEGNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLADGTRHSGQSIKSVYSKSFYQTGTNIQV
AGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDSNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNTS
RSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRNSNASYSMSNDLKGGMTNLSG
VYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSSLNYRGAYGNTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGD
TMVLVKAPGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGG
KVLMTLKYGNKSVPFGAIVTHGKNKNGSIVAENGQVYLTGLPQSGKLQVSWGKDKNSNCIVEYKLPEVSPGTLLNQQTAI
CR

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=862, Percent_Identity=57.4245939675174, Blast_Score=1061, Evalue=0.0,
Organism=Escherichia coli, GI1787172, Length=887, Percent_Identity=43.2919954904171, Blast_Score=726, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=850, Percent_Identity=42.5882352941177, Blast_Score=688, Evalue=0.0,
Organism=Escherichia coli, GI1789533, Length=849, Percent_Identity=37.2202591283863, Blast_Score=501, Evalue=1e-143,
Organism=Escherichia coli, GI1786332, Length=866, Percent_Identity=32.5635103926097, Blast_Score=397, Evalue=1e-111,
Organism=Escherichia coli, GI1788427, Length=854, Percent_Identity=28.5714285714286, Blast_Score=324, Evalue=1e-89,
Organism=Escherichia coli, GI87081778, Length=868, Percent_Identity=26.6129032258064, Blast_Score=244, Evalue=3e-65,
Organism=Escherichia coli, GI1789610, Length=374, Percent_Identity=26.2032085561497, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 96631; Mature: 96500

Theoretical pI: Translated: 6.47; Mature: 6.47

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFRAAFKAYRMHQVLLLPRFARLTIALGLATAVFPVDAEYYFNPRFLSNDLAESVDLS
CCHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHEEEECCCEEEECCCHHCCHHHHHCCCH
AFTKGREAPPGTYRVDIYLNDEFITSRDITFIADDNNADLIPCLSTDLLVSLGIKKSALL
HHHCCCCCCCCCEEEEEEECCCEEECCCEEEEECCCCCCEEEECCCCHHEECCCCHHHHC
DNKEHSAEKHVPDNSACTPLQDRLADASTEFDVGQQHLSLSVPQIYVGRMARGYVSPDLW
CCCHHCHHHCCCCCCCCCCHHHHHHCCCCCCCCCCHHEEECCCHHHHHHHHCCCCCHHHH
EEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYLNLQSGINIGSWRLRDNSTWSYNSGSS
HHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCEEEECCCCC
NSSDSNKWQHINTSAERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQH
CCCCCCCEEEECCCCCCCEEECCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
GFAPVIHGIARGTAQVSVKQNGYDVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSI
CHHHHHHHHHCCCEEEEEECCCEEEEEEECCCCCEEHHCCCCCCCCCEEEEEEEECCCCE
QTLYVPYSSVPVLQRAGYTRYALAMGEYRSGNNLQSSPKFIQGSLMHGLEGNWTPYGGMQ
EEEEECCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCE
IAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLADGTRHSGQSIKSVYSKSFYQTGTNIQ
ECCCCEEEECCCCCCCCEEEEEEEEEEECCCEECCCCCCCCHHHHHHHHHHHHCCCCEEE
VAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDSNEQTQFIDYFNLFYSKRGQEQISISQ
EEEEEEECCCEEECCHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
QLGNYGTTFFSASRQSYWNTSRSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLA
HHCCCCCEEEECCCHHHCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEE
FTLNVPFSHWMRTDSQSAFRNSNASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGN
EEEECCHHHHHCCCCHHHHHCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCEEEEEECC
THGGNTSSGTSGYSSLNYRGAYGNTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLG
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCC
DTMVLVKAPGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETV
CEEEEEECCCCCCEEECCCCCCCCCCCCEEEEEEHHHHCCCEEEEECCCCCCCCCCCCEE
VTVIPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVTHGKNKNGSIVAENGQVYLT
EEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCEEEECCEEEEE
GLPQSGKLQVSWGKDKNSNCIVEYKLPEVSPGTLLNQQTAICR
ECCCCCEEEEEECCCCCCCEEEEEECCCCCCCCEECCCHHCCC
>Mature Secondary Structure 
TAFRAAFKAYRMHQVLLLPRFARLTIALGLATAVFPVDAEYYFNPRFLSNDLAESVDLS
CHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHEEEECCCEEEECCCHHCCHHHHHCCCH
AFTKGREAPPGTYRVDIYLNDEFITSRDITFIADDNNADLIPCLSTDLLVSLGIKKSALL
HHHCCCCCCCCCEEEEEEECCCEEECCCEEEEECCCCCCEEEECCCCHHEECCCCHHHHC
DNKEHSAEKHVPDNSACTPLQDRLADASTEFDVGQQHLSLSVPQIYVGRMARGYVSPDLW
CCCHHCHHHCCCCCCCCCCHHHHHHCCCCCCCCCCHHEEECCCHHHHHHHHCCCCCHHHH
EEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYLNLQSGINIGSWRLRDNSTWSYNSGSS
HHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCEEEECCCCC
NSSDSNKWQHINTSAERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQH
CCCCCCCEEEECCCCCCCEEECCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
GFAPVIHGIARGTAQVSVKQNGYDVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSI
CHHHHHHHHHCCCEEEEEECCCEEEEEEECCCCCEEHHCCCCCCCCCEEEEEEEECCCCE
QTLYVPYSSVPVLQRAGYTRYALAMGEYRSGNNLQSSPKFIQGSLMHGLEGNWTPYGGMQ
EEEEECCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCE
IAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLADGTRHSGQSIKSVYSKSFYQTGTNIQ
ECCCCEEEECCCCCCCCEEEEEEEEEEECCCEECCCCCCCCHHHHHHHHHHHHCCCCEEE
VAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDSNEQTQFIDYFNLFYSKRGQEQISISQ
EEEEEEECCCEEECCHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
QLGNYGTTFFSASRQSYWNTSRSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLA
HHCCCCCEEEECCCHHHCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEE
FTLNVPFSHWMRTDSQSAFRNSNASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGN
EEEECCHHHHHCCCCHHHHHCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCEEEEEECC
THGGNTSSGTSGYSSLNYRGAYGNTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLG
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCC
DTMVLVKAPGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETV
CEEEEEECCCCCCEEECCCCCCCCCCCCEEEEEEHHHHCCCEEEEECCCCCCCCCCCCEE
VTVIPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVTHGKNKNGSIVAENGQVYLT
EEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCEEEECCEEEEE
GLPQSGKLQVSWGKDKNSNCIVEYKLPEVSPGTLLNQQTAICR
ECCCCCEEEEEECCCCCCCEEEEEECCCCCCCCEECCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1970114; 7610040; 9278503 [H]