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The map label for this gene is ompD [H]

Identifier: 218704944

GI number: 218704944

Start: 1742746

End: 1743846

Strand: Reverse

Name: ompD [H]

Synonym: ECUMN_1725

Alternate gene names: 218704944

Gene position: 1743846-1742746 (Counterclockwise)

Preceding gene: 218704945

Following gene: 218704943

Centisome position: 33.52

GC content: 44.23

Gene sequence:

>1101_bases
ATGAAATTAAAAATAGTTGCGGTGGTTGTAACTGGTTTGTTAGCTGCGAACGTAGCACACGCTGCCGAAGTCTATAACAA
GGATGGTAATAAACTCGACCTTTATGGCAAGGTTACCGCTCTACGTTATTTTACTGATGATAAGCGTGACGATGGTGATA
AAACTTATGCCCGTCTCGGCTTTAAAGGAGAAACGCAAATCAATGATCAAATGATTGGTTTTGGTCACTGGGAATATGAT
TTTAAAGGCTATAACGATGAAGCCAACGGCTCGCGCGGTAACAAGACCCGTCTGGCCTATGCAGGTTTAAAAATTAGTGA
ATTTGGCTCTCTGGACTATGGTCGTAACTACGGTGTCGGCTATGACATTGGTTCATGGACCGATATGTTGCCAGAATTTG
GTGGCGATACCTGGAGTCAGAAAGATGTCTTCATGACATACCGTACTACCGGTGTGGCAACCTATCGCAACTACGATTTC
TTCGGCTTAATTGAAGGTCTGAACTTTGCCGCGCAATATCAAGGCAAAAATGAACGCACTGACAATGGTCATCTTTATGG
TGCTGACTACACGCGTGCCAATGGTGACGGTTTCGGTATCTCCTCAACTTATGTTTATGATGGCTTTGGTATCGGTGCGG
TGTATACCAAATCCGATCGGACAAATGCGCAGGAAAGAGCCGCTGCTAATCCTCTCAATGCCTCCGGTAAGAATGCAGAA
CTGTGGGCTACAGGTATAAAATATGATGCCAACAACATCTACTTTGCAGCTAATTACGCTGAAACATTAAACATGACCAC
CTATGGCGATGGTTATATCTCTAACAAAGCACAAAGTTTTGAAGTAGTGGCACAATATCAATTCGACTTCGGCTTGCGCC
CATCACTCGCTTACCTGAAATCGAAAGGCAGAGATCTGGGCCGCTACGGCGACCAGGACATGATTGAGTATATCGACGTT
GGTGCGACGTATTTCTTCAACAAAAATATGTCGACCTATGTTGATTATAAAATCAACCTGATTGATGAAAGCGACTTTAC
CCGTGCCGTAGATATTCGCACCGATAACATCGTCGCAACGGGCATTACCTATCAGTTCTAA

Upstream 100 bases:

>100_bases
ATCACCATTCTATTTTAAAAACAGTATGTCATTTATAAATGACGCCGTTTAAAATTCGTTTAGAAAATACGTTTAACGAT
AATTAAAAGGATTCTGTTAA

Downstream 100 bases:

>100_bases
CATCCTCTCCTGACCAGCCCTTCTCTGGGCTGGTTTTTGATTTAAGTGCTGCTGTATGACTCCTTAAGTAAAAATGAGCA
ATTTTTGATATTTCTGGTCA

Product: Outer membrane porin protein ompD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYD
FKGYNDEANGSRGNKTRLAYAGLKISEFGSLDYGRNYGVGYDIGSWTDMLPEFGGDTWSQKDVFMTYRTTGVATYRNYDF
FGLIEGLNFAAQYQGKNERTDNGHLYGADYTRANGDGFGISSTYVYDGFGIGAVYTKSDRTNAQERAAANPLNASGKNAE
LWATGIKYDANNIYFAANYAETLNMTTYGDGYISNKAQSFEVVAQYQFDFGLRPSLAYLKSKGRDLGRYGDQDMIEYIDV
GATYFFNKNMSTYVDYKINLIDESDFTRAVDIRTDNIVATGITYQF

Sequences:

>Translated_366_residues
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYD
FKGYNDEANGSRGNKTRLAYAGLKISEFGSLDYGRNYGVGYDIGSWTDMLPEFGGDTWSQKDVFMTYRTTGVATYRNYDF
FGLIEGLNFAAQYQGKNERTDNGHLYGADYTRANGDGFGISSTYVYDGFGIGAVYTKSDRTNAQERAAANPLNASGKNAE
LWATGIKYDANNIYFAANYAETLNMTTYGDGYISNKAQSFEVVAQYQFDFGLRPSLAYLKSKGRDLGRYGDQDMIEYIDV
GATYFFNKNMSTYVDYKINLIDESDFTRAVDIRTDNIVATGITYQF
>Mature_366_residues
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYD
FKGYNDEANGSRGNKTRLAYAGLKISEFGSLDYGRNYGVGYDIGSWTDMLPEFGGDTWSQKDVFMTYRTTGVATYRNYDF
FGLIEGLNFAAQYQGKNERTDNGHLYGADYTRANGDGFGISSTYVYDGFGIGAVYTKSDRTNAQERAAANPLNASGKNAE
LWATGIKYDANNIYFAANYAETLNMTTYGDGYISNKAQSFEVVAQYQFDFGLRPSLAYLKSKGRDLGRYGDQDMIEYIDV
GATYFFNKNMSTYVDYKINLIDESDFTRAVDIRTDNIVATGITYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=377, Percent_Identity=59.6816976127321, Blast_Score=419, Evalue=1e-118,
Organism=Escherichia coli, GI1787641, Length=382, Percent_Identity=59.4240837696335, Blast_Score=403, Evalue=1e-113,
Organism=Escherichia coli, GI1786436, Length=368, Percent_Identity=56.25, Blast_Score=398, Evalue=1e-112,
Organism=Escherichia coli, GI1787160, Length=377, Percent_Identity=57.0291777188329, Blast_Score=385, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 40981; Mature: 40981

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLG
CEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEC
FKGETQINDQMIGFGHWEYDFKGYNDEANGSRGNKTRLAYAGLKISEFGSLDYGRNYGVG
CCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECEEEECCCCCCCCCCCCCC
YDIGSWTDMLPEFGGDTWSQKDVFMTYRTTGVATYRNYDFFGLIEGLNFAAQYQGKNERT
CCCCCHHHHHHHHCCCCCCCCCEEEEEEECCEEEEECCCCEEEECCCCEEEEECCCCCCC
DNGHLYGADYTRANGDGFGISSTYVYDGFGIGAVYTKSDRTNAQERAAANPLNASGKNAE
CCCEEEECCCEECCCCCCCCCCEEEECCCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCE
LWATGIKYDANNIYFAANYAETLNMTTYGDGYISNKAQSFEVVAQYQFDFGLRPSLAYLK
EEEEEEEECCCEEEEEEEHHHHEEEEECCCCEECCCCCCEEEEEEEEECCCCCCHHHHHH
SKGRDLGRYGDQDMIEYIDVGATYFFNKNMSTYVDYKINLIDESDFTRAVDIRTDNIVAT
HCCCHHHCCCCHHHHHHHHCCEEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCEEEE
GITYQF
CEEECC
>Mature Secondary Structure
MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLG
CEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEC
FKGETQINDQMIGFGHWEYDFKGYNDEANGSRGNKTRLAYAGLKISEFGSLDYGRNYGVG
CCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECEEEECCCCCCCCCCCCCC
YDIGSWTDMLPEFGGDTWSQKDVFMTYRTTGVATYRNYDFFGLIEGLNFAAQYQGKNERT
CCCCCHHHHHHHHCCCCCCCCCEEEEEEECCEEEEECCCCEEEECCCCEEEEECCCCCCC
DNGHLYGADYTRANGDGFGISSTYVYDGFGIGAVYTKSDRTNAQERAAANPLNASGKNAE
CCCEEEECCCEECCCCCCCCCCEEEECCCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCE
LWATGIKYDANNIYFAANYAETLNMTTYGDGYISNKAQSFEVVAQYQFDFGLRPSLAYLK
EEEEEEEECCCEEEEEEEHHHHEEEEECCCCEECCCCCCEEEEEEEEECCCCCCHHHHHH
SKGRDLGRYGDQDMIEYIDVGATYFFNKNMSTYVDYKINLIDESDFTRAVDIRTDNIVAT
HCCCHHHCCCCHHHHHHHHCCEEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCEEEE
GITYQF
CEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA