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The map label for this gene is ydcO [H]

Identifier: 218704901

GI number: 218704901

Start: 1696739

End: 1698034

Strand: Reverse

Name: ydcO [H]

Synonym: ECUMN_1680

Alternate gene names: 218704901

Gene position: 1698034-1696739 (Counterclockwise)

Preceding gene: 218704904

Following gene: 218704897

Centisome position: 32.64

GC content: 52.39

Gene sequence:

>1296_bases
GTGGTGGATAAAAAGCGAGCGAGATTTTCCATGCGACTCCTCCGGCAAAACGGAAGTTTATCACTTGTGCGTTATAACGG
ACAAATGCTACGGTACCTGTACGTTATAACGCACGAGGTGACTATGCGTCTGTTTTCTATTCCTCCACCCACGCTACTGG
CGGGGTTTCTGGCGGTATTAATTGGCTACGCCAGTTCAGCGGCAATAATCTGGCAAGCAGCGATTGTCGCCGGAGCCACC
ACTGCACAAATCTCTGGCTGGATGACGGCGCTGGGGCTGGCAATGGGCGTCAGTACGCTGGCTCTGACATTATGGTATCG
CGTACCTGTTCTCACCGCATGGTCAACGCCTGGCGCGGCTTTGTTGGTCACCGGATTACAGGGATTAACACTTAACGAAG
CCATCGGCGTTTTTATTGTCACCAACGCGTTAATAGTCCTCTGCGGCATAACGGGACTCTTTGCTCGTCTGATGCGCATT
ATTCCGCACTCGCTTGCGGCGGCAATGCTTGCCGGGATTTTATTACGCTTTGGTTTACAGGCGTTTGCCAGTCTGGATGG
TCAATTTACGTTGTGTGGCAGTATGTTGCTGGTATGGCTGGCAACCAGGGCCGTTGCGCCGCGCTATGCGGTAATTGCCG
CGATGATTATTGGGATCGTGATCGTTATGGCGCAAGGTGACGTTGTCACAAATGATGTTGTCTTTAACCCCGTTCTCCCC
ACTTATATTACCCCTGATTTTTCGTTTGCTCACAGTCTGAGCGTTGCACTCCCCCTTTTTCTGGTGACGATGGCATCGCA
AAACGCACCGGGTATCGCAGCAATGAAAGCTGCCGGGTATTCGGCTCCTGTTTCGCCGTTGATTGTGTTTACTGGATTGC
TGGCGCTTGTTTTTTCCCCTTTCGGCGTTTATTCCGTCGGTATTGCGGCAATCACCGCGGCTATTTGTCAAAGCCCGGAA
GCGCATCCGGATAAAGATCAACGTTGGCTGGCAGCTGCCGTTGCAGGCATTTTTTATTTGCTCGCAGGTCTTTTTGGTAG
TGCTATTACCGGGATGATGGCTGCCCTGCCCGTAAGTTGGATCCAGATGCTGGCAGGTCTGGCGCTGTTGAGTACCATTG
GCGGCAGTTTGTATCAGGCGCTGCATAATGAGCGTGAGCGCGACGCGGCGGTGGTGGCATTTCTGGTAACGGCAAGTGGA
TTGACGCTGGTCGGGATTGGTTCTGCGTTCTGGGGATTAATTGCCGGAGGCGTTTGTTACGTGGTGTTGAATTTAATCGC
TCACAGAAACCGATAA

Upstream 100 bases:

>100_bases
TTCATTACGCTCAATCTGCCCTAACATCGCTTTAGAAACGCCCGTCGCTTCTGCCAGTCGCGAAAGACTCCAGCCGCGCT
GCTGACGTAGTTGTTTAAGT

Downstream 100 bases:

>100_bases
TAAAAAGCGCCATCTTACGATGGCGCAGCTGGAATTACTTTTTGTTAACGTCAAACATAGTGGCATCGGTCGCCATGTCA
TCAATAACTTGTTTAATATT

Product: putative benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MVDKKRARFSMRLLRQNGSLSLVRYNGQMLRYLYVITHEVTMRLFSIPPPTLLAGFLAVLIGYASSAAIIWQAAIVAGAT
TAQISGWMTALGLAMGVSTLALTLWYRVPVLTAWSTPGAALLVTGLQGLTLNEAIGVFIVTNALIVLCGITGLFARLMRI
IPHSLAAAMLAGILLRFGLQAFASLDGQFTLCGSMLLVWLATRAVAPRYAVIAAMIIGIVIVMAQGDVVTNDVVFNPVLP
TYITPDFSFAHSLSVALPLFLVTMASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSPFGVYSVGIAAITAAICQSPE
AHPDKDQRWLAAAVAGIFYLLAGLFGSAITGMMAALPVSWIQMLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASG
LTLVGIGSAFWGLIAGGVCYVVLNLIAHRNR

Sequences:

>Translated_431_residues
MVDKKRARFSMRLLRQNGSLSLVRYNGQMLRYLYVITHEVTMRLFSIPPPTLLAGFLAVLIGYASSAAIIWQAAIVAGAT
TAQISGWMTALGLAMGVSTLALTLWYRVPVLTAWSTPGAALLVTGLQGLTLNEAIGVFIVTNALIVLCGITGLFARLMRI
IPHSLAAAMLAGILLRFGLQAFASLDGQFTLCGSMLLVWLATRAVAPRYAVIAAMIIGIVIVMAQGDVVTNDVVFNPVLP
TYITPDFSFAHSLSVALPLFLVTMASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSPFGVYSVGIAAITAAICQSPE
AHPDKDQRWLAAAVAGIFYLLAGLFGSAITGMMAALPVSWIQMLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASG
LTLVGIGSAFWGLIAGGVCYVVLNLIAHRNR
>Mature_431_residues
MVDKKRARFSMRLLRQNGSLSLVRYNGQMLRYLYVITHEVTMRLFSIPPPTLLAGFLAVLIGYASSAAIIWQAAIVAGAT
TAQISGWMTALGLAMGVSTLALTLWYRVPVLTAWSTPGAALLVTGLQGLTLNEAIGVFIVTNALIVLCGITGLFARLMRI
IPHSLAAAMLAGILLRFGLQAFASLDGQFTLCGSMLLVWLATRAVAPRYAVIAAMIIGIVIVMAQGDVVTNDVVFNPVLP
TYITPDFSFAHSLSVALPLFLVTMASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSPFGVYSVGIAAITAAICQSPE
AHPDKDQRWLAAAVAGIFYLLAGLFGSAITGMMAALPVSWIQMLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASG
LTLVGIGSAFWGLIAGGVCYVVLNLIAHRNR

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=390, Percent_Identity=98.4615384615385, Blast_Score=747, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 45385; Mature: 45385

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDKKRARFSMRLLRQNGSLSLVRYNGQMLRYLYVITHEVTMRLFSIPPPTLLAGFLAVL
CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IGYASSAAIIWQAAIVAGATTAQISGWMTALGLAMGVSTLALTLWYRVPVLTAWSTPGAA
HHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHH
LLVTGLQGLTLNEAIGVFIVTNALIVLCGITGLFARLMRIIPHSLAAAMLAGILLRFGLQ
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFASLDGQFTLCGSMLLVWLATRAVAPRYAVIAAMIIGIVIVMAQGDVVTNDVVFNPVLP
HHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEECCEEECCCCC
TYITPDFSFAHSLSVALPLFLVTMASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSP
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
FGVYSVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFYLLAGLFGSAITGMMAALPVSW
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQMLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASGLTLVGIGSAFWGLIAGGVCY
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHH
VVLNLIAHRNR
HHHHHHHHCCC
>Mature Secondary Structure
MVDKKRARFSMRLLRQNGSLSLVRYNGQMLRYLYVITHEVTMRLFSIPPPTLLAGFLAVL
CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IGYASSAAIIWQAAIVAGATTAQISGWMTALGLAMGVSTLALTLWYRVPVLTAWSTPGAA
HHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHH
LLVTGLQGLTLNEAIGVFIVTNALIVLCGITGLFARLMRIIPHSLAAAMLAGILLRFGLQ
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFASLDGQFTLCGSMLLVWLATRAVAPRYAVIAAMIIGIVIVMAQGDVVTNDVVFNPVLP
HHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEECCEEECCCCC
TYITPDFSFAHSLSVALPLFLVTMASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSP
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
FGVYSVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFYLLAGLFGSAITGMMAALPVSW
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQMLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASGLTLVGIGSAFWGLIAGGVCY
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHH
VVLNLIAHRNR
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]