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The map label for this gene is sohA

Identifier: 218701902

GI number: 218701902

Start: 3789846

End: 3790181

Strand: Direct

Name: sohA

Synonym: ECIAI39_3628

Alternate gene names: 218701902

Gene position: 3789846-3790181 (Clockwise)

Preceding gene: 218701901

Following gene: 218701903

Centisome position: 73.85

GC content: 47.62

Gene sequence:

>336_bases
ATGCCCGCTAATGCTCGCTCTCACGCTGTACTGACCACTGAATCAAAGGTCACGATACGCGGACAAACAACTATCCCCGC
GCCAGTGCGTGAGGCCTTAAAACTGAAGCCAGGCCTGGACAGCATTCATTACGAAATTCTGCCTGGTGGGCAAGTATTTA
TGTGCCGACTGGGAGATGAACAGGAGGATCATACTATGAATGCATTTTTGCGTTTTCTGGATGCAGATATCCAGAACAAC
CCGCAAATAACTCGTCCATTCAACATTCAACAAGGAAAGAAACTTGTCGCAGGCATGGACGTCAACATTGATGATGAGAT
TGGCGACGACGAATAA

Upstream 100 bases:

>100_bases
TATTGTTTAAAGTCCCCACGTCCATTAATAATGCATTTGCATTACCTTAGTTCAAGCTTATAATTTGAGCAGAAAACAGG
CTGTAAAAGGACAGTGAATC

Downstream 100 bases:

>100_bases
TGGATTTTCCACAAAGGGTTAATGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTACGACGCTTTAGTTGCC
GAAGTCGAGACATTAAAGGG

Product: putative regulator PrlF

Products: NA

Alternate protein names: Protein prlF [H]

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGLDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQITRPFNIQQGKKLVAGMDVNIDDEIGDDE

Sequences:

>Translated_111_residues
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGLDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQITRPFNIQQGKKLVAGMDVNIDDEIGDDE
>Mature_110_residues
PANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGLDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNNP
QITRPFNIQQGKKLVAGMDVNIDDEIGDDE

Specific function: PrlF appears to be a bifunctional protein, with the ability to regulate its own expression as well as relieve the export block imposed by high-level synthesis of the lamB-lacZ hybrid protein [H]

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789517, Length=111, Percent_Identity=98.1981981981982, Blast_Score=226, Evalue=3e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12329; Mature: 12198

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGLDSIHYEILPGGQVFMCRLGDE
CCCCCCCCEEEECCCEEEEECCCCCCHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCC
QEDHTMNAFLRFLDADIQNNPQITRPFNIQQGKKLVAGMDVNIDDEIGDDE
CCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
PANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGLDSIHYEILPGGQVFMCRLGDE
CCCCCCCEEEECCCEEEEECCCCCCHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCC
QEDHTMNAFLRFLDADIQNNPQITRPFNIQQGKKLVAGMDVNIDDEIGDDE
CCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2407727; 2152898; 9278503 [H]