Click here to switch to the map view.

The map label for this gene is yqiC

Identifier: 218701816

GI number: 218701816

Start: 3690485

End: 3690775

Strand: Direct

Name: yqiC

Synonym: ECIAI39_3539

Alternate gene names: 218701816

Gene position: 3690485-3690775 (Clockwise)

Preceding gene: 218701813

Following gene: 218701817

Centisome position: 71.91

GC content: 49.48

Gene sequence:

>291_bases
ATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGA
AGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACG
TCCAAACGCAAGTCCTGTTACGGACTCGTGAGAAACTGGCTCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGT
ACTGAGATCAAAAAGCAGCCAGATCCAGAGACTCTCCCCCCAACGCTGTAA

Upstream 100 bases:

>100_bases
ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCT
ATCAGTACAGGGAAACTACA

Downstream 100 bases:

>100_bases
ACATTTGTCTTTAATGCACTGTAAATTATGAATTAATCCTCTAATTTACAGTGCTTTCTATTACCTTATCGCGTAACCCC
ATTCAGAAAAGCATCACAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRQTLQAQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRISELENRS
TEIKKQPDPETLPPTL

Sequences:

>Translated_96_residues
MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRQTLQAQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRISELENRS
TEIKKQPDPETLPPTL
>Mature_96_residues
MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRQTLQAQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRISELENRS
TEIKKQPDPETLPPTL

Specific function: Unknown

COG id: COG2960

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082201, Length=96, Percent_Identity=100, Blast_Score=187, Evalue=9e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQIC_ECOLI (Q46868)

Other databases:

- EMBL:   U28377
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   H65091
- RefSeq:   AP_003592.1
- RefSeq:   NP_417514.4
- ProteinModelPortal:   Q46868
- STRING:   Q46868
- EnsemblBacteria:   EBESCT00000003208
- EnsemblBacteria:   EBESCT00000017262
- GeneID:   947524
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5505
- KEGG:   eco:b3042
- EchoBASE:   EB2847
- EcoGene:   EG13031
- eggNOG:   COG2960
- GeneTree:   EBGT00050000010911
- HOGENOM:   HBG754417
- OMA:   ILQNQLM
- ProtClustDB:   CLSK2312589
- BioCyc:   EcoCyc:G7582-MONOMER
- Genevestigator:   Q46868
- InterPro:   IPR007475

Pfam domain/function: PF04380 DUF526

EC number: NA

Molecular weight: Translated: 11276; Mature: 11276

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRQTLQAQLTRLDLVSREEFDVQTQVLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTREKLALLEQRISELENRSTEIKKQPDPETLPPTL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRQTLQAQLTRLDLVSREEFDVQTQVLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTREKLALLEQRISELENRSTEIKKQPDPETLPPTL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9868784