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The map label for this gene is ycbR

Identifier: 218700542

GI number: 218700542

Start: 2255183

End: 2255884

Strand: Reverse

Name: ycbR

Synonym: ECIAI39_2208

Alternate gene names: 218700542

Gene position: 2255884-2255183 (Counterclockwise)

Preceding gene: 218700543

Following gene: 218700541

Centisome position: 43.96

GC content: 46.15

Gene sequence:

>702_bases
ATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGTTCGTTCACATGGGCGGC
AGGTAAAGGTGGGGTCGGACTTGCAGCAACACGTCTTGTTTATTCGGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTA
ACACCAGTCCGGATGTTCCTTATCTGATTCAGTCATGGGTGATGACACCAGATAATAAAAAGTCAGCGGACTTTATTATT
ACACCACCGCTATTTGTGCTGAATCCGGCAAACGAGAACCTGCTACGCATTATGTACATTGGCGCGCCGTTGGCGAAAGA
CAGAGAAACTCTTTTCTTCACCAGCGTACGGGCAGTCCCTTCAACAACGAAGCGGGAAGAAGGCAATACCCTGAAGATTG
CCACACAAAGCGTCATCAAACTTTTCTGGCGACCAAAAGGTTTAGCGTATCCCTTAGCCGAGGCTCCGGCGAAACTGCGT
TGCACTTCGTCAGCTGACATGGTTACGGTCAGTAACCCAACACCTTATTTCATTACCCTGACAGACCTGAAAATAGGTGG
AAAAGTAGTTAAAAATCAAATGATTTCCCCCTTTGATAAATACCAATTCTCTCTGCCAATGGGTGCCAAAAACAGCAGCG
TAACGTACCGAACTATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAA

Upstream 100 bases:

>100_bases
TCCATATTAATTATTATTAATATCAGCCATTAATTTTTTATTAATTAATACCCTTCCAGTGTCCTGGAGGGGATATTCAT
TTTTTTAAGAGTGACTATTT

Downstream 100 bases:

>100_bases
TTCGTCTTCATTTAAGAGAGCGAGATGTATAGAACTCAACGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTT
TATTGGTGGGCTGGTGGTGT

Product: putative periplasmic pilin chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MKTCITKGIVTVSLTAILLSCSFTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFII
TPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPLAEAPAKLR
CTSSADMVTVSNPTPYFITLTDLKIGGKVVKNQMISPFDKYQFSLPMGAKNSSVTYRTINDYGAETPQLNCKS

Sequences:

>Translated_233_residues
MKTCITKGIVTVSLTAILLSCSFTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFII
TPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPLAEAPAKLR
CTSSADMVTVSNPTPYFITLTDLKIGGKVVKNQMISPFDKYQFSLPMGAKNSSVTYRTINDYGAETPQLNCKS
>Mature_233_residues
MKTCITKGIVTVSLTAILLSCSFTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFII
TPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPLAEAPAKLR
CTSSADMVTVSNPTPYFITLTDLKIGGKVVKNQMISPFDKYQFSLPMGAKNSSVTYRTINDYGAETPQLNCKS

Specific function: Could be required for the biogenesis of the putative ycbQ fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1787171, Length=233, Percent_Identity=97.4248927038627, Blast_Score=466, Evalue=1e-133,
Organism=Escherichia coli, GI1790771, Length=224, Percent_Identity=43.75, Blast_Score=174, Evalue=3e-45,
Organism=Escherichia coli, GI1786743, Length=204, Percent_Identity=40.1960784313725, Blast_Score=163, Evalue=8e-42,
Organism=Escherichia coli, GI1789532, Length=216, Percent_Identity=35.1851851851852, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788677, Length=203, Percent_Identity=35.4679802955665, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082203, Length=250, Percent_Identity=31.6, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87081806, Length=205, Percent_Identity=34.6341463414634, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1786936, Length=206, Percent_Identity=32.5242718446602, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786333, Length=211, Percent_Identity=29.8578199052133, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788428, Length=227, Percent_Identity=25.1101321585903, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 25483; Mature: 25483

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTCITKGIVTVSLTAILLSCSFTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVP
CCCHHHHCHHHHHHHHHHHHHCEEEECCCCCCCHHEEEEEECCCCCEEEEEECCCCCCCC
YLIQSWVMTPDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVP
HHHHHHCCCCCCCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCC
STTKREEGNTLKIATQSVIKLFWRPKGLAYPLAEAPAKLRCTSSADMVTVSNPTPYFITL
CCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCHHCCCCEEEECCCCCEEEECCCCCEEEEE
TDLKIGGKVVKNQMISPFDKYQFSLPMGAKNSSVTYRTINDYGAETPQLNCKS
EEEECCCHHHHHHHCCCCHHEEEECCCCCCCCCEEEEEEHHCCCCCCCCCCCC
>Mature Secondary Structure
MKTCITKGIVTVSLTAILLSCSFTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVP
CCCHHHHCHHHHHHHHHHHHHCEEEECCCCCCCHHEEEEEECCCCCEEEEEECCCCCCCC
YLIQSWVMTPDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVP
HHHHHHCCCCCCCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCC
STTKREEGNTLKIATQSVIKLFWRPKGLAYPLAEAPAKLRCTSSADMVTVSNPTPYFITL
CCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCHHCCCCEEEECCCCCEEEECCCCCEEEEE
TDLKIGGKVVKNQMISPFDKYQFSLPMGAKNSSVTYRTINDYGAETPQLNCKS
EEEECCCHHHHHHHCCCCHHEEEECCCCCCCCCEEEEEEHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]