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The map label for this gene is ycbS

Identifier: 218700541

GI number: 218700541

Start: 2252558

End: 2255158

Strand: Reverse

Name: ycbS

Synonym: ECIAI39_2207

Alternate gene names: 218700541

Gene position: 2255158-2252558 (Counterclockwise)

Preceding gene: 218700542

Following gene: 218700540

Centisome position: 43.94

GC content: 47.67

Gene sequence:

>2601_bases
ATGTATAGAACTCAACGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGT
GTCGGCAGTGTTCAATGCACAAGCTGAAACCTGGTTCGATCCAGCCTTTTTCAAAGATGATCCCTCAATGGTGGCTGATT
TGTCTCGTTTCGAAAAAGGGCAAAAAATAACGCCAGGGGTTTATCGAGTCGATATTGTTCTGAATCAGACAATTGTAGAT
ACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTGGATGCAAT
GGGCGTGAATACTGATGCGTTTCCGGCTTTTAAACAACTGGATAAACAAGCGTGTGCGCCATTGGCGGAAATTATTCCGG
ATGCCAGCGTAACTTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAACGCTCGT
GGTTATGTCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCATTTAGCGGGGCTAACAGTAT
TCATAGCAGCGCAGGTAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGCCCATGGAGAT
TGCGCAACAATTCAACATGGAGTCGCAGTAGTGGCCAAACCGCAGAATGGAAGAATCTCAGCAGCTATTTGCAGCGGGCG
GTGATTCCATTAAAAGGCGAACTGACCGTCGGTGATGATTATACGGCAGGCGATTTTTTTGATAGCGTCAGCTTTCGTGG
CGTGCAGCTGGCGTCAGATGACAACATGCTGCCAGACAGCTTGAAAGGGTTTGCGCCAGTGGTGCGTGGTATCGCCAAAA
GCAATGCACAGGTAACGATTAAGCAAAATGGTTACACCATCTATCAAACTTATGTTTCGCCTGGCGCTTTTGAGATTAGT
GATCTCTACTCTACGTCGTCGAGTGGTGATTTGTTGGTTGAAATCAAAGAAGCTGACGGTAGTGTCAATAGTTACAGTGT
GCCCTTTTCCAGCGTGCCATTACTCCAGCGTCAGGGACGCATCAAATATGCGGTGACGCTGGCGAAATACAGAACCAATA
GTAATGACCAGCAAGAAAGTAAATTTGCTCAGGCCACGCTGCAATGGGGTGGGCCGTGGGGAACGACCTGGTATGGCGGA
GGGCAATATGCTGAATATTACCGTACCGCTATGTTTGGTCTGGGTTTTAACCTCGGCGATTTCGGAGCAATTTCGTTCGA
CGCGACCCAGGCTAAAAGTACGCTGGCAGACCAAAGTGAACATAAAGGGCAGTCATATCGTTTTCTGTATGCCAAAACGC
TCAACCAATTGGGCACCAACTTTCAATTGATGGGCTACCGCTATTCGACGTCGGGTTTCTACACCCTTTCCGACACTATG
TATAAACACATGGATGGCTATGAATTTAATGACGGTGATGATGAAGATACGCCAATGTGGTCGCGTTATTACAATTTGTT
TTACACCAAACGTGGCAAACTGCAGGTCAACATCTCCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGCGGTAGCC
AGCAAACTTACTGGCATACCGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTCTCGCTG
GGGGTTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGACGCTGACCAGGTGTTTGCACTTAATTTTTCCCTGCCGCT
CAATCTGTTGCTCCCCAAAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATGACCTCTAATACCAGTATCG
ATAATGAAGGGCATTCCACACAGAACCTCGGGTTAACCGAGACATTGCTGGATGACGGCAACCTGAGCTACAGCATACAA
CAGGGGTATAACAGCGAGGGGAAAACGGCTAATGGTAGCGCCAGTATGGACTACAAAGGGGCGTTTGCAGATGCTCGAGT
GGGCTACAACTACAGCGATAACGGCAGTCAACAACAACTTAACTACGCTCTTTCAGGCAGTTTAGTTGCCCATTCACAAG
GCATTACCCTGGGGCAATCGCTGGGAGAAACTAACGTTCTGATTGCCGCGCCAGGCGCAGAGAATACTCGTGTGGCGAAC
AGCACCGGGCTGAAAACTGACTGGCGTGGATATACCGTTGTGCCTTATGCCACTTCTTATCGGGAAAATCGAATTGCACT
TGATGCGGCGTCGTTAAAACGTAACGTGGATCTTGAAAATGCCGTAGTAAACGTGGTTCCCACCAAAGGGGCATTGGTTC
TGGCGGAGTTCAATGCCCATGCGGGGGCCAGGGTATTAATGAAAACATCAAAGCAGGGTATGCCGCTGAGATTTGGTGCA
ATGGCAACACTGGATGGCGCACAAACAATTAGCGGTATCATTGATGATGATGGTTCGCTCTATATGTCTGGTTTGCCGGC
GAAGGGAACGATAACTGTACGCTGGGGCGACGCTCCCGATCAAATTTGTCATATCAGTTACGAGCTTACCGAACAACAAA
TTAACGCTGCGATTACGCGGATGGATTCAGTATGCGAATAA

Upstream 100 bases:

>100_bases
CAAAAACAGCAGCGTAACGTACCGAACTATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAATTCG
TCTTCATTTAAGAGAGCGAG

Downstream 100 bases:

>100_bases
TTTCAGGGGATAGTAGTGTGTTAAGACTCCGGCTTCTTTTGACTGCTGTTTTAATGCTGTGGGGATTTCATGCCGCCGCT
TATACCGGGCAGTGTCATAC

Product: putative outer membrane export usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 866; Mature: 866

Protein sequence:

>866_residues
MYRTQRQHSLLSSGGVPSFIGGLVVFVSAVFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD
TRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQACAPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR
GYVPPERWDEGINALLLGYSFSGANSIHSSAGSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQVTIKQNGYTIYQTYVSPGAFEIS
DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNDQQESKFAQATLQWGGPWGTTWYGG
GQYAEYYRTAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL
GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPKSNDSYTRKKNYAWMTSNTSIDNEGHSTQNLGLTETLLDDGNLSYSIQ
QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGMPLRFGA
MATLDGAQTISGIIDDDGSLYMSGLPAKGTITVRWGDAPDQICHISYELTEQQINAAITRMDSVCE

Sequences:

>Translated_866_residues
MYRTQRQHSLLSSGGVPSFIGGLVVFVSAVFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD
TRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQACAPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR
GYVPPERWDEGINALLLGYSFSGANSIHSSAGSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQVTIKQNGYTIYQTYVSPGAFEIS
DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNDQQESKFAQATLQWGGPWGTTWYGG
GQYAEYYRTAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL
GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPKSNDSYTRKKNYAWMTSNTSIDNEGHSTQNLGLTETLLDDGNLSYSIQ
QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGMPLRFGA
MATLDGAQTISGIIDDDGSLYMSGLPAKGTITVRWGDAPDQICHISYELTEQQINAAITRMDSVCE
>Mature_866_residues
MYRTQRQHSLLSSGGVPSFIGGLVVFVSAVFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD
TRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQACAPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR
GYVPPERWDEGINALLLGYSFSGANSIHSSAGSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQVTIKQNGYTIYQTYVSPGAFEIS
DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNDQQESKFAQATLQWGGPWGTTWYGG
GQYAEYYRTAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL
GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPKSNDSYTRKKNYAWMTSNTSIDNEGHSTQNLGLTETLLDDGNLSYSIQ
QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGMPLRFGA
MATLDGAQTISGIIDDDGSLYMSGLPAKGTITVRWGDAPDQICHISYELTEQQINAAITRMDSVCE

Specific function: Could be involved in the export and assembly of the putative ycbQ fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1787172, Length=866, Percent_Identity=97.1131639722864, Blast_Score=1730, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=857, Percent_Identity=48.4247374562427, Blast_Score=818, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=846, Percent_Identity=45.0354609929078, Blast_Score=749, Evalue=0.0,
Organism=Escherichia coli, GI1789533, Length=872, Percent_Identity=38.6467889908257, Blast_Score=553, Evalue=1e-158,
Organism=Escherichia coli, GI1786332, Length=842, Percent_Identity=32.3040380047506, Blast_Score=382, Evalue=1e-107,
Organism=Escherichia coli, GI1788427, Length=786, Percent_Identity=31.6793893129771, Blast_Score=356, Evalue=4e-99,
Organism=Escherichia coli, GI87081778, Length=821, Percent_Identity=26.9183922046285, Blast_Score=245, Evalue=1e-65,
Organism=Escherichia coli, GI1789610, Length=815, Percent_Identity=24.6625766871166, Blast_Score=124, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 95112; Mature: 95112

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRTQRQHSLLSSGGVPSFIGGLVVFVSAVFNAQAETWFDPAFFKDDPSMVADLSRFEKG
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
QKITPGVYRVDIVLNQTIVDTRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQL
CCCCCCEEEEEEEEECEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
DKQACAPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNARGYVPPERWDEGINALLLGYS
HHHHCCCHHHHCCCCEEEEEEEEEEEEEECCEEEEECCCCCCCCHHHHHCCCEEEEEEEE
FSGANSIHSSAGSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
CCCCCCHHHCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHC
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQVTI
CCCCCCEEEECCCCCCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
KQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGR
EECCEEEEEEECCCCCEEEHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHCCC
IKYAVTLAKYRTNSNDQQESKFAQATLQWGGPWGTTWYGGGQYAEYYRTAMFGLGFNLGD
EEEEEEEEEECCCCCCHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
FGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
CCEEEECCHHHHHHHHCCHHCCCCCEEEEHHHHHHHHCCCEEEEEEEECCCCEEEEHHHH
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHT
HHHCCCCCCCCCCCCCCCHHHHHEEEEEEECCCEEEEHHHHCCCCCCEEEECCCCEEEEC
DQQDRLLQFGYNTQIKDLSLGVSWNYSKSRGQPDADQVFALNFSLPLNLLLPKSNDSYTR
CCHHHHEECCCCCCEEEEEEEEEECCHHCCCCCCCCCEEEEEECCCEEEEEECCCCCCCC
KKNYAWMTSNTSIDNEGHSTQNLGLTETLLDDGNLSYSIQQGYNSEGKTANGSASMDYKG
CCCEEEEECCCCCCCCCCCCCCCCCHHHEECCCCEEEEEECCCCCCCCCCCCCCCCCCCC
AFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
CCCCCEECCCCCCCCCHHHEEEEECCCEEEECCCCEECCCCCCCEEEEECCCCCCCEEEC
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAH
CCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHCCCCCCCEEEEEEECCCEEEEEECCCC
AGARVLMKTSKQGMPLRFGAMATLDGAQTISGIIDDDGSLYMSGLPAKGTITVRWGDAPD
CCEEEEEECCCCCCCEEECCEEECCCHHHHHHEECCCCCEEEECCCCCCEEEEEECCCCC
QICHISYELTEQQINAAITRMDSVCE
CEEEEEHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYRTQRQHSLLSSGGVPSFIGGLVVFVSAVFNAQAETWFDPAFFKDDPSMVADLSRFEKG
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
QKITPGVYRVDIVLNQTIVDTRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQL
CCCCCCEEEEEEEEECEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
DKQACAPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNARGYVPPERWDEGINALLLGYS
HHHHCCCHHHHCCCCEEEEEEEEEEEEEECCEEEEECCCCCCCCHHHHHCCCEEEEEEEE
FSGANSIHSSAGSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
CCCCCCHHHCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHC
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQVTI
CCCCCCEEEECCCCCCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
KQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGR
EECCEEEEEEECCCCCEEEHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHCCC
IKYAVTLAKYRTNSNDQQESKFAQATLQWGGPWGTTWYGGGQYAEYYRTAMFGLGFNLGD
EEEEEEEEEECCCCCCHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
FGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
CCEEEECCHHHHHHHHCCHHCCCCCEEEEHHHHHHHHCCCEEEEEEEECCCCEEEEHHHH
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHT
HHHCCCCCCCCCCCCCCCHHHHHEEEEEEECCCEEEEHHHHCCCCCCEEEECCCCEEEEC
DQQDRLLQFGYNTQIKDLSLGVSWNYSKSRGQPDADQVFALNFSLPLNLLLPKSNDSYTR
CCHHHHEECCCCCCEEEEEEEEEECCHHCCCCCCCCCEEEEEECCCEEEEEECCCCCCCC
KKNYAWMTSNTSIDNEGHSTQNLGLTETLLDDGNLSYSIQQGYNSEGKTANGSASMDYKG
CCCEEEEECCCCCCCCCCCCCCCCCHHHEECCCCEEEEEECCCCCCCCCCCCCCCCCCCC
AFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
CCCCCEECCCCCCCCCHHHEEEEECCCEEEECCCCEECCCCCCCEEEEECCCCCCCEEEC
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAH
CCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHCCCCCCCEEEEEEECCCEEEEEECCCC
AGARVLMKTSKQGMPLRFGAMATLDGAQTISGIIDDDGSLYMSGLPAKGTITVRWGDAPD
CCEEEEEECCCCCCCEEECCEEECCCHHHHHHEECCCCCEEEECCCCCCEEEEEECCCCC
QICHISYELTEQQINAAITRMDSVCE
CEEEEEHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]